Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.8e-151 539.3 279 100.0
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.7e-139 498.8 259 100.0
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.9e-125 451.4 259 88.0
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 6.6e-122 441.0 259 86.1
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.9e-121 439.5 259 85.3
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.8e-120 435.6 259 86.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 3.6e-120 435.3 257 84.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.2e-120 434.5 259 83.8
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.8e-119 433.0 257 84.0
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.4e-118 428.7 259 83.4
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.4e-118 428.3 262 85.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 5.8e-118 427.9 258 82.9
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.8e-117 425.2 259 82.2
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 8.4e-117 424.1 259 83.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.4e-116 423.3 260 81.2
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.4e-116 422.5 259 80.7
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.4e-116 422.5 259 78.8
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.4e-116 421.4 261 79.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 5.4e-116 421.4 259 80.3
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.1e-116 421.0 259 79.5
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.1e-116 421.0 259 79.5
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.2e-115 420.2 259 79.5
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.1e-115 419.5 260 80.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.1e-115 419.5 259 79.9
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.7e-115 419.1 259 79.5
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.6e-115 418.3 259 80.3
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 7.8e-115 417.5 259 79.5
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.0e-114 417.2 259 79.9
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.0e-114 417.2 260 80.8
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.3e-114 416.8 260 81.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.3e-114 416.8 259 79.9
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.3e-114 416.8 263 81.0
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-114 416.0 258 78.7
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.9e-114 415.2 260 81.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 6.6e-114 414.5 259 80.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.5e-113 413.3 259 79.2
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.5e-113 412.5 259 79.9
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.5e-113 412.5 260 80.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 3.3e-113 412.1 259 77.6
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-113 412.1 259 78.8
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.3e-113 412.1 259 78.8
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 3.3e-113 412.1 262 78.6
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 7.3e-113 411.0 262 78.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 9.6e-113 410.6 259 77.6
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.8e-112 409.1 260 78.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.8e-112 409.1 263 80.2
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 3.6e-112 408.7 260 78.1
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.6e-112 408.7 260 79.6
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 8.1e-112 407.5 260 78.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-111 407.1 262 77.1
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-111 406.8 259 77.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.8e-111 406.4 262 77.9
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.3e-111 404.8 274 76.3
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.3e-111 404.8 259 80.7
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.9e-111 404.4 262 78.6
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 5.8e-110 401.4 264 74.2
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 7.6e-110 401.0 259 75.3
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.7e-109 399.8 262 77.9
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.2e-109 399.4 259 78.0
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 3.8e-109 398.7 259 78.0
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 6.4e-109 397.9 260 76.2
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.4e-109 397.5 262 75.2
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 4.2e-108 395.2 260 75.4
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.4e-108 394.8 249 77.9
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 9.3e-108 394.0 296 70.6
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.6e-107 393.3 265 75.8
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.6e-107 393.3 259 76.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.1e-107 392.9 259 75.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.7e-107 392.5 263 76.4
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 2.7e-107 392.5 259 77.2
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.5e-107 392.1 259 76.4
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.6e-107 391.7 260 75.4
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 7.9e-107 391.0 263 76.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.3e-106 390.2 259 74.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.1e-105 387.1 259 76.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.1e-105 387.1 281 71.9
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.9e-105 386.3 259 75.3
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 3.3e-105 385.6 259 75.3
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 4.3e-105 385.2 261 76.2
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 7.4e-105 384.4 259 73.7
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 9.6e-105 384.0 259 74.1
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.3e-104 383.6 259 73.7
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.3e-104 383.6 259 73.7
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.3e-104 383.6 260 74.6
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.6e-104 383.3 260 74.6
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 3.6e-104 382.1 259 75.3
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.6e-104 382.1 260 75.8
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 4.8e-104 381.7 259 74.9
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 4.8e-104 381.7 259 72.2
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.1e-103 380.6 259 73.0
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.1e-103 380.6 254 75.2
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.4e-103 380.2 259 73.4
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.4e-103 379.4 259 72.6
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.4e-103 379.4 259 73.4
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 4.0e-103 378.6 259 72.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.0e-103 378.6 248 76.6
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.0e-103 378.6 257 75.5
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.3e-103 378.3 257 73.9
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 9.0e-103 377.5 259 72.2
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.0e-103 377.5 260 74.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.2e-102 377.1 259 73.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.0e-102 376.3 259 73.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.6e-102 375.9 260 72.3
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.6e-102 375.9 266 72.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.4e-102 375.6 259 73.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.4e-102 375.6 259 72.6
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.4e-102 375.6 259 72.6
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.5e-102 375.2 259 73.0
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 4.5e-102 375.2 262 71.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 7.6e-102 374.4 259 72.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-101 373.6 265 72.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.9e-101 372.5 225 80.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 8.4e-101 370.9 241 75.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.4e-100 369.4 264 71.2
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.5e-99 365.5 226 78.8
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.5e-99 365.5 265 70.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.3e-98 363.6 259 69.9
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 8.7e-98 360.9 262 70.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.4e-95 353.6 264 67.8
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.6e-94 349.4 256 72.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.9e-93 345.1 263 66.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.8e-90 336.7 261 65.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.3e-90 336.3 263 65.8
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-89 334.0 225 71.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.1e-89 334.0 260 65.4
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.7e-89 331.6 230 74.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.1e-87 325.9 261 64.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.5e-85 318.2 250 66.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 8.5e-85 317.8 271 62.0
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 6.7e-82 308.1 179 83.2
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 7.7e-78 294.7 264 59.1
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.9e-76 290.0 261 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.5e-76 289.7 241 59.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.7e-75 286.2 227 60.4
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 4.8e-72 275.4 253 53.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.1e-71 272.7 248 57.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 6.9e-71 271.6 203 67.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.9e-70 268.5 256 53.5
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 8.5e-69 264.6 239 54.8
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.2e-68 261.5 256 54.3
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.2e-66 255.4 245 53.1
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.3e-65 252.7 195 69.7
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 7.4e-65 251.5 230 59.1
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-63 247.7 189 67.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 7.0e-63 245.0 255 50.2
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.6e-62 243.8 255 49.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.8e-61 239.2 201 59.7
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.2e-60 236.1 148 78.4
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-59 233.8 214 60.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.1e-59 233.4 221 52.0
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 6.3e-56 221.9 149 74.5
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-55 219.5 183 62.8
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.0e-54 216.9 264 50.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.0e-50 202.6 152 68.4
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 4.0e-50 202.6 179 58.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.4e-39 167.5 254 34.3
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.6e-30 137.5 258 33.3
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.8e-25 119.0 76 77.6
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 4.9e-24 115.9 69 84.1
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 8.3e-24 115.2 132 50.0
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.4e-23 112.5 288 28.5
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 9.2e-23 111.7 293 26.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.3e-21 107.1 124 50.0
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 8.6e-21 105.1 294 28.2
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 3.7e-16 89.7 262 28.6
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.3e-16 88.6 184 39.1


User provided reference genes

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