Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 6.0e-242 840.5 448 100.0
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-200 703.4 512 76.2
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-198 696.8 495 78.8
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.2e-194 683.3 512 72.1
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 1.7e-191 672.9 510 72.9
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 9.1e-190 667.2 509 70.3
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 8.8e-185 650.6 509 69.0
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 1.5e-184 649.8 509 69.0
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-183 646.7 512 68.2
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 2.2e-183 646.0 509 68.4
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 1.1e-182 643.7 512 68.8
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.1e-182 643.7 529 66.7
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 1.6e-181 639.8 510 66.5
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.6e-181 639.8 508 69.5
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.7e-181 639.0 509 67.4
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 3.5e-181 638.6 507 67.5
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 4.5e-181 638.3 510 66.3
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 1.7e-180 636.3 508 68.7
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 6.6e-180 634.4 512 65.4
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 3.3e-179 632.1 547 64.9
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 3.3e-179 632.1 510 65.7
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 5.5e-179 631.3 512 66.2
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 5.5e-179 631.3 512 65.8
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 1.6e-178 629.8 508 67.3
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 2.1e-178 629.4 514 65.6
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 2.1e-178 629.4 512 65.8
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 2.8e-178 629.0 509 67.4
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 3.6e-178 628.6 502 66.3
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 4.7e-178 628.2 512 65.2
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 6.1e-178 627.9 511 66.1
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 2.3e-177 625.9 512 65.2
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 3.0e-177 625.5 512 64.6
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 2.6e-176 622.5 511 64.4
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 7.5e-176 620.9 512 66.6
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 6.3e-175 617.8 516 64.3
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 8.3e-175 617.5 510 64.3
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.8e-174 616.3 511 65.0
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 1.8e-174 616.3 513 66.1
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 3.1e-174 615.5 514 65.0
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 9.2e-174 614.0 513 66.7
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.2e-173 613.6 511 65.2
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 4.5e-173 611.7 509 65.2
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 2.3e-172 609.4 511 64.0
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 3.8e-172 608.6 509 65.0
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 8.6e-172 607.4 517 62.7
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 1.1e-171 607.1 514 65.8
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 4.3e-171 605.1 510 64.9
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 4.3e-171 605.1 512 64.6
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 4.3e-171 605.1 511 62.8
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.4e-169 600.1 512 64.8
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 2.3e-169 599.4 513 63.7
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 6.8e-169 597.8 513 65.5
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 6.8e-169 597.8 510 64.1
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 8.3e-167 590.9 511 62.0
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 3.2e-166 589.0 509 62.7
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 9.2e-166 587.4 509 62.7
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.0e-164 583.9 511 60.7
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 2.3e-164 582.8 511 60.9
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 3.9e-164 582.0 564 59.9
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 5.0e-164 581.6 562 58.7
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 7.3e-163 577.8 513 62.0
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 2.3e-161 572.8 507 60.9
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 5.2e-161 571.6 511 62.6
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 2.6e-160 569.3 498 62.2
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 9.8e-160 567.4 516 63.4
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.2e-159 566.2 512 61.9
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 3.7e-159 565.5 510 61.4
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 4.9e-159 565.1 561 59.5
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 8.3e-159 564.3 509 60.3
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 1.4e-158 563.5 510 60.6
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 7.0e-158 561.2 511 61.1
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 1.0e-156 557.4 509 60.5
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 1.0e-156 557.4 511 60.7
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 1.7e-156 556.6 515 60.2
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 2.3e-156 556.2 509 60.5
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 3.0e-156 555.8 509 60.5
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 6.6e-156 554.7 512 59.8
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 2.5e-155 552.7 512 60.0
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 3.3e-155 552.4 513 60.2
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 9.5e-155 550.8 509 60.3
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 1.6e-154 550.1 603 52.6
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 2.1e-154 549.7 505 60.0
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 6.2e-154 548.1 510 59.2
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 8.1e-154 547.7 509 59.7
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 1.1e-153 547.4 414 70.5
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 3.1e-153 545.8 418 67.2
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 2.6e-152 542.7 465 63.2
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 4.4e-152 542.0 507 58.8
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 4.4e-152 542.0 511 58.7
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 2.4e-150 536.2 510 59.4
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 7.1e-150 534.6 508 58.3
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.5e-149 532.3 513 57.1
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 6.0e-149 531.6 434 66.4
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 6.0e-149 531.6 509 56.4
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 7.8e-149 531.2 510 57.3
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 1.0e-148 530.8 511 58.7
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.0e-148 529.3 513 56.9
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 3.9e-148 528.9 511 58.9
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.8e-146 522.7 512 56.4
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 8.9e-145 517.7 495 58.8
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.5e-144 516.9 493 57.6
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 2.9e-143 512.7 508 56.1
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.9e-142 510.0 502 56.4
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 9.2e-142 507.7 509 55.6
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 2.1e-141 506.5 506 56.5
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 2.1e-138 496.5 507 54.4
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 6.9e-137 491.5 507 54.8
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 8.4e-135 484.6 425 63.1
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 1.9e-134 483.4 551 51.4
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 7.1e-134 481.5 507 52.7
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 4.8e-122 442.2 409 58.9
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 4.0e-121 439.1 509 50.7
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 2.6e-120 436.4 379 61.2
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 7.9e-117 424.9 485 53.0
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 7.6e-112 408.3 433 53.6
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.6e-106 390.6 412 50.2
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 4.2e-102 375.9 472 45.6
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 6.1e-101 372.1 503 44.9
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 7.4e-99 365.2 497 41.9
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.6e-93 347.4 300 62.7
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 8.2e-90 335.1 329 57.8
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 1.1e-89 334.7 451 43.7
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 9.1e-89 331.6 508 38.2
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 2.5e-86 323.6 475 38.9
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 3.2e-86 323.2 429 49.2
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 5.2e-84 315.8 457 45.7
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.6e-80 303.5 272 62.1
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 2.2e-79 300.4 272 61.8
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 1.5e-75 287.7 471 37.6
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 4.4e-75 286.2 318 51.6
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 8.0e-69 265.4 347 45.0
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 5.2e-52 209.5 517 30.9
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.3e-42 178.3 101 86.1
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-26 125.2 75 82.7
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 2.3e-23 114.4 132 52.3
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 2.8e-21 107.5 102 53.9
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 2.9e-18 97.4 70 71.4
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 5.4e-17 93.2 56 82.1
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 1.5e-11 75.1 55 61.8
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.3e-07 62.0 126 43.7
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 3.9e-07 60.5 53 54.7
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 5.1e-07 60.1 45 62.2
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 1.1e-06 58.9 140 28.6
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 1.1e-06 58.9 144 26.4
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.9e-06 58.2 144 26.4
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.9e-06 58.2 144 26.4
Gohir.A02G042700 Gossypium hirsutum HOM05D003335 ORTHO05D003853 2.5e-06 57.8 144 27.8
Gohir.D02G048300 Gossypium hirsutum HOM05D003335 ORTHO05D003853 2.5e-06 57.8 144 27.8
Gorai.005G053600 Gossypium raimondii HOM05D003335 ORTHO05D003853 2.5e-06 57.8 144 27.8
RcHm_v2.0_Chr1g0336791 Rosa chinensis HOM05D005033 ORTHO05D036613 2.5e-06 57.8 40 67.5
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 3.3e-06 57.4 145 24.1
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 3.3e-06 57.4 97 30.9
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 3.3e-06 57.4 102 29.4
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 5.6e-06 56.6 171 25.7
Cpa.g.sc44.4 Carica papaya HOM05D003335 ORTHO05D003853 7.4e-06 56.2 101 29.7
DCAR_031698 Daucus carota HOM05D003335 ORTHO05D003853 7.4e-06 56.2 107 32.7
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 7.4e-06 56.2 41 63.4


User provided reference genes

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