Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 7.1e-72 273.9 141 100.0
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.5e-71 271.6 141 99.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 3.6e-52 208.4 142 78.9
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 2.4e-48 195.7 142 73.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.9e-41 172.2 144 63.2
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.9e-40 169.5 139 65.5
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 9.3e-40 167.2 132 67.4
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.6e-39 164.9 143 58.0
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 7.9e-39 164.1 139 66.2
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 3.0e-38 162.2 139 61.2
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 5.1e-38 161.4 143 62.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.1e-38 161.4 140 62.1
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 8.7e-38 160.6 139 60.4
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.5e-37 159.8 141 58.9
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.9e-37 159.5 141 58.9
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.3e-37 158.7 143 60.8
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 4.3e-37 158.3 144 61.8
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 4.3e-37 158.3 141 61.7
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 5.7e-37 157.9 143 60.8
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.7e-37 157.9 143 60.8
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 5.7e-37 157.9 142 61.3
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 7.4e-37 157.5 137 62.0
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 7.4e-37 157.5 137 62.0
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 9.6e-37 157.1 138 60.9
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.3e-36 156.8 142 62.0
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.1e-36 156.0 141 57.4
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.1e-36 156.0 136 62.5
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.1e-36 156.0 142 61.3
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 6.3e-36 154.5 96 79.2
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 6.3e-36 154.5 139 58.3
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 8.2e-36 154.1 133 60.2
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.8e-35 152.9 141 58.2
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 3.1e-35 152.1 141 58.2
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 3.1e-35 152.1 134 59.7
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 3.1e-35 152.1 140 59.3
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 4.1e-35 151.8 136 58.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 4.1e-35 151.8 128 60.9
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.5e-34 149.8 141 58.2
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.5e-34 149.8 143 56.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 2.0e-34 149.4 139 56.8
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.6e-34 149.1 131 60.3
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 2.6e-34 149.1 142 57.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 3.4e-34 148.7 139 55.4
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 4.5e-34 148.3 137 58.4
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 4.5e-34 148.3 137 59.9
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 7.6e-34 147.5 139 56.8
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.9e-33 145.6 141 57.4
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.5e-33 144.4 132 61.4
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 6.5e-33 144.4 139 57.6
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.5e-32 142.5 140 52.1
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.5e-32 142.5 135 54.8
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 3.2e-32 142.1 137 55.5
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 5.5e-32 141.4 135 55.6
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 5.5e-32 141.4 142 57.0
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 7.2e-32 141.0 128 54.7
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 2.7e-31 139.0 137 56.2
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 2.7e-31 139.0 139 55.4
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.7e-31 139.0 139 55.4
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 4.6e-31 138.3 147 55.1
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 6.1e-31 137.9 128 57.0
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.0e-30 137.1 137 51.8
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.3e-30 136.7 134 55.2
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.3e-30 136.7 128 55.5
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.3e-30 136.7 134 53.7
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.3e-30 136.7 139 54.0
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.8e-30 136.3 138 50.7
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.0e-30 135.6 137 51.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 3.0e-30 135.6 139 52.5
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 5.1e-30 134.8 130 57.7
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 5.1e-30 134.8 128 57.8
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.7e-30 134.4 142 53.5
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 8.7e-30 134.0 129 55.8
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.1e-29 133.7 138 52.9
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.5e-29 133.3 128 53.9
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.5e-29 133.3 140 51.4
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.9e-29 132.9 139 52.5
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.9e-29 132.9 136 55.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 2.5e-29 132.5 133 51.1
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 4.3e-29 131.7 133 51.1
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 9.7e-29 130.6 137 50.4
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.6e-28 129.8 133 52.6
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 2.2e-28 129.4 139 54.0
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.8e-28 129.0 132 50.0
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.8e-28 129.0 128 54.7
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 3.7e-28 128.6 139 53.2
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.8e-28 128.3 119 58.8
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 4.8e-28 128.3 131 51.1
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 4.8e-28 128.3 128 53.9
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 8.2e-28 127.5 124 55.6
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.4e-27 126.7 132 52.3
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.4e-27 126.7 135 55.6
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.8e-27 126.3 139 51.1
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.9e-27 124.4 140 50.0
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 9.1e-27 124.0 145 48.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.5e-26 123.2 136 52.2
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.5e-26 123.2 138 47.8
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.0e-26 122.9 146 48.6
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.0e-26 122.9 85 71.8
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.0e-26 122.9 142 50.0
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 2.0e-26 122.9 141 48.9
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.4e-26 122.1 138 50.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.5e-26 121.7 137 50.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 5.9e-26 121.3 84 67.9
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 5.9e-26 121.3 142 48.6
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 5.9e-26 121.3 93 63.4
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.0e-25 120.6 130 50.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-25 120.2 138 47.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.7e-25 119.8 139 51.1
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.7e-25 119.8 138 48.6
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.2e-25 119.4 137 49.6
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.2e-25 119.4 144 50.0
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.9e-25 119.0 140 46.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.4e-24 116.7 137 48.2
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.4e-24 116.7 142 48.6
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.5e-24 115.9 136 46.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.5e-24 115.9 140 44.3
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.5e-24 115.9 139 47.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 4.2e-24 115.2 135 45.2
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 9.4e-24 114.0 80 67.5
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.2e-23 113.6 111 54.1
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.6e-23 113.2 84 61.9
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.6e-23 111.7 146 43.8
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.1e-23 111.3 111 53.2
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 7.9e-23 110.9 103 52.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 2.3e-22 109.4 135 45.9
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 3.9e-22 108.6 134 44.0
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.9e-22 108.6 131 47.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 6.7e-22 107.8 135 45.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 8.8e-22 107.5 130 43.1
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 1.1e-21 107.1 121 43.0
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.3e-21 105.5 138 44.9
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.2e-20 102.8 138 44.9
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 4.8e-20 101.7 85 51.8
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.1e-19 100.5 133 45.1
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 6.9e-19 97.8 141 41.1
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.6e-18 95.9 223 33.2
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.4e-18 95.5 100 47.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 5.0e-17 91.7 109 42.2
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 2.7e-15 85.9 89 47.2
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.0e-14 84.0 134 38.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.8e-14 83.2 102 49.0
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.7e-12 76.6 135 37.0
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.8e-12 75.9 56 62.5
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.7e-12 75.5 56 62.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.8e-12 75.1 140 39.3
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 7.0e-11 71.2 40 75.0
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 3.5e-10 68.9 37 81.1
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.0e-09 67.4 41 70.7
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 1.3e-09 67.0 95 42.1
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.2e-09 66.2 89 47.2
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.8e-09 65.5 93 41.9
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 3.8e-09 65.5 35 80.0
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 1.1e-08 63.9 99 41.4
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 1.1e-08 63.9 96 45.8
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 5.5e-08 61.6 88 36.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 7.2e-08 61.2 63 50.8
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 7.2e-08 61.2 101 37.6
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.2e-07 60.5 124 33.9
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.2e-07 60.5 44 54.5
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.6e-07 60.1 84 36.9
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.1e-07 59.7 120 28.3
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.1e-07 59.7 42 69.0
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 2.7e-07 59.3 31 83.9
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 3.0e-06 55.8 96 39.6
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.0e-06 55.5 90 30.0


User provided reference genes

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