Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 0.0e+00 1134.8 918 100.0
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.3e-235 819.7 914 81.0
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 2.7e-212 743.0 908 76.3
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 1.1e-205 721.1 901 65.6
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.7e-182 644.0 915 70.4
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 1.4e-181 641.0 913 73.7
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 6.7e-179 632.1 913 73.8
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 1.2e-172 611.3 918 69.7
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.4e-168 597.8 911 70.3
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.4e-168 597.8 911 70.3
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 6.5e-166 589.0 908 69.6
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 4.3e-162 576.2 916 70.0
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 8.2e-161 572.0 919 70.3
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.9e-157 560.8 919 69.4
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 4.3e-154 549.7 913 69.6
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 2.8e-153 547.0 824 67.8
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 2.9e-150 537.0 908 68.3
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.4e-147 528.1 911 66.2
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 8.8e-147 525.4 913 67.3
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.3e-145 521.5 915 66.9
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 8.2e-145 518.8 913 67.4
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.4e-144 518.1 597 67.3
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.4e-144 517.3 906 66.3
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.1e-144 516.9 906 66.2
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 4.5e-143 513.1 817 72.6
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 7.2e-141 505.8 844 68.4
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 1.6e-140 504.6 895 66.9
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.3e-139 500.7 906 65.5
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.1e-138 498.4 913 63.7
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.3e-138 496.9 915 64.4
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 4.4e-138 496.5 918 59.2
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.4e-136 490.7 918 58.9
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 3.1e-136 490.3 909 62.6
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 9.1e-136 488.8 915 60.1
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.7e-134 484.6 916 62.6
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 3.6e-132 476.9 913 65.2
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 8.0e-132 475.7 908 63.5
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.6e-130 470.7 919 55.7
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.7e-129 468.0 885 66.6
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 4.8e-129 466.5 913 60.8
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 6.3e-129 466.1 915 56.0
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 1.1e-128 465.3 961 61.4
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 7.2e-125 452.6 919 61.7
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 3.0e-123 447.2 918 64.1
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.2e-121 441.0 680 62.5
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 6.3e-121 439.5 917 60.4
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 8.3e-121 439.1 908 61.9
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 7.0e-120 436.0 913 62.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.3e-118 431.8 910 61.0
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 3.6e-116 423.7 905 64.0
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 6.1e-116 422.9 680 60.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 1.8e-115 421.4 916 63.1
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 8.9e-115 419.1 912 62.1
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.3e-113 415.2 909 60.2
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 4.6e-111 406.8 682 61.9
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 5.9e-111 406.4 917 61.5
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 5.6e-109 399.8 905 45.2
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 1.6e-108 398.3 872 57.5
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 8.0e-108 396.0 918 60.2
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 4.0e-107 393.7 916 60.6
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 4.0e-107 393.7 919 60.9
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 4.6e-103 380.2 912 59.9
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 1.4e-99 368.6 910 61.6
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.8e-99 368.2 593 58.2
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 2.0e-98 364.8 912 59.4
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 3.2e-96 357.5 916 59.3
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 4.3e-93 347.1 914 60.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.6e-92 344.0 907 58.8
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 2.2e-89 334.7 935 60.4
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 3.7e-89 334.0 599 55.9
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 8.4e-89 332.8 599 56.3
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.4e-88 330.1 599 57.1
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 5.4e-88 330.1 599 57.3
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 3.0e-86 324.3 682 55.1
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 5.6e-85 320.1 599 55.3
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 9.9e-82 309.3 361 48.2
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 6.4e-81 306.6 908 55.3
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.6e-79 302.0 914 55.0
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 3.5e-79 300.8 917 58.2
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 5.8e-74 283.5 583 52.7
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 4.9e-73 280.4 578 50.7
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 2.4e-72 278.1 579 52.5
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 2.4e-72 278.1 579 52.5
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 9.6e-69 266.2 589 54.8
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 4.8e-68 263.8 590 55.1
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.6e-66 258.1 591 54.7
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 8.7e-62 243.0 343 38.5
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.5e-53 215.7 570 50.2
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 7.9e-47 193.4 173 48.6
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.3e-44 186.0 576 48.8
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.4e-43 181.8 247 42.5
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.9e-40 172.2 479 59.5
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.4e-35 156.0 447 61.3
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.4e-35 155.2 453 60.7
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 1.5e-34 152.5 291 55.0
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 4.5e-34 151.0 447 61.3
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 3.8e-33 147.9 559 47.9
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 9.4e-32 143.3 206 42.2
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.2e-28 132.1 413 63.9
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.0e-27 127.1 410 63.7
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 5.9e-26 124.0 81 67.9
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.0e-25 123.2 157 38.9
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.3e-25 122.9 535 52.3
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 2.0e-18 99.0 144 37.5
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.0e-17 96.7 155 38.7
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 8.5e-17 93.6 97 48.5
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.0e-09 70.1 42 69.0
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 7.2e-08 63.9 54 51.9
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.2e-07 63.2 117 32.5
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.6e-07 62.8 103 31.1
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 2.8e-07 62.0 173 24.9
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 3.6e-07 61.6 100 32.0
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 6.1e-07 60.8 132 31.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 8.0e-07 60.5 309 21.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.0e-06 60.1 97 33.0
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 1.8e-06 59.3 111 36.9
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 2.3e-06 58.9 348 21.0
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 2.3e-06 58.9 107 29.0
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 3.0e-06 58.5 78 35.9
FvH4_3g42430 Fragaria vesca HOM05D000162 ORTHO05D000090 4.0e-06 58.2 98 31.6
SalBow8G2181 Salvia bowleyana HOM05D000001 ORTHO05D006238 4.0e-06 58.2 108 30.6
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 4.0e-06 58.2 95 32.6
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 5.2e-06 57.8 84 34.5
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 5.2e-06 57.8 84 34.5
Cc06_g01640 Coffea canephora HOM05D007172 ORTHO05D009267 5.2e-06 57.8 107 29.9
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 5.2e-06 57.8 96 35.4
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 5.2e-06 57.8 103 28.2
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 5.2e-06 57.8 103 28.2
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 5.2e-06 57.8 182 28.0
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 5.2e-06 57.8 105 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-06 57.4 124 30.6
BcaC04g22583 Brassica carinata HOM05D000162 ORTHO05D024264 6.8e-06 57.4 100 37.0
Dinv17357 Davidia involucrata HOM05D002986 ORTHO05D007611 6.8e-06 57.4 89 36.0
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 6.8e-06 57.4 81 32.1
CARHR012020 Cardamine hirsuta HOM05D002890 ORTHO05D009847 8.8e-06 57.0 117 33.3
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 8.8e-06 57.0 71 33.8
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 8.8e-06 57.0 117 33.3


User provided reference genes

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