Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012266 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.4e-96 356.3 182 100.0
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 5.2e-67 258.1 181 79.6
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.4e-59 233.4 181 74.0
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 3.4e-50 202.2 183 65.0
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 4.7e-44 181.8 184 58.7
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 3.4e-42 175.6 183 57.9
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 5.4e-40 168.3 184 56.5
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 3.9e-38 162.2 175 55.4
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 1.1e-35 154.1 183 51.4
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 4.0e-35 152.1 148 58.1
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 2.2e-33 146.4 182 52.2
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 4.9e-33 145.2 179 49.2
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 3.2e-32 142.5 184 45.1
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 2.7e-31 139.4 184 48.4
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 1.3e-30 137.1 185 48.1
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 1.7e-30 136.7 184 44.6
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 5.1e-30 135.2 185 48.6
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 2.5e-29 132.9 186 47.3
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 3.3e-29 132.5 184 44.0
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 5.6e-29 131.7 184 45.1
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 5.6e-29 131.7 185 44.9
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 9.6e-29 131.0 183 47.0
VMungo1383G1580 Vigna mungo HOM05D004475 ORTHO05D005235 1.2e-28 130.6 183 45.4
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 4.7e-28 128.6 185 47.6
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 4.7e-28 128.6 183 45.4
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 6.2e-28 128.3 186 46.8
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 6.2e-28 128.3 185 46.5
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 8.1e-28 127.9 183 45.4
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 1.8e-27 126.7 182 48.4
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 1.8e-27 126.7 180 44.4
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 2.4e-27 126.3 182 46.7
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 3.1e-27 125.9 184 42.9
MSTRG.10806 Avicennia marina HOM05D004475 ORTHO05D005235 4.0e-27 125.6 188 49.5
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 5.2e-27 125.2 181 45.3
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 8.9e-27 124.4 185 44.3
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 1.2e-26 124.0 180 44.4
Duzib128G1477 Durio zibethinus HOM05D004475 ORTHO05D005235 2.6e-26 122.9 179 46.9
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 3.4e-26 122.5 183 44.8
Gohir.A02G105902 Gossypium hirsutum HOM05D004475 ORTHO05D005235 4.4e-26 122.1 184 45.1
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 4.4e-26 122.1 182 42.9
Duzib093G1491 Durio zibethinus HOM05D004475 ORTHO05D005235 5.8e-26 121.7 185 45.4
Actinidia17673 Actinidia chinensis HOM05D004475 ORTHO05D005235 7.6e-26 121.3 123 58.5
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 1.3e-25 120.6 185 43.2
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 1.3e-25 120.6 182 44.5
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 1.7e-25 120.2 186 44.6
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 2.2e-25 119.8 187 47.1
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 8.4e-25 117.9 152 48.7
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 1.4e-24 117.1 183 44.3
Gorai.003G086800 Gossypium raimondii HOM05D004475 ORTHO05D005235 1.9e-24 116.7 184 44.0
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 2.4e-24 116.3 185 42.7
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 2.4e-24 116.3 185 42.2
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 3.2e-24 115.9 183 42.6
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 3.2e-24 115.9 186 44.1
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 7.1e-24 114.8 185 41.1
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 7.1e-24 114.8 183 42.6
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 2.1e-23 113.2 184 41.3
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 2.1e-23 113.2 183 40.4
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 2.7e-23 112.8 185 41.6
Gohir.D03G073000 Gossypium hirsutum HOM05D004475 ORTHO05D005235 2.7e-23 112.8 184 43.5
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 3.5e-23 112.5 184 41.3
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 4.6e-23 112.1 146 45.2
SGA_v2.0_scaffold105G30365 Striga asiatica HOM05D004475 ORTHO05D005235 6.0e-23 111.7 187 42.8
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 1.0e-22 110.9 185 43.2
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 1.3e-22 110.5 180 43.9
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 2.3e-22 109.8 183 41.0
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 3.0e-22 109.4 151 48.3
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 3.9e-22 109.0 187 46.5
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 3.9e-22 109.0 207 42.5
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 8.7e-22 107.8 186 41.9
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 8.7e-22 107.8 186 41.4
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 8.7e-22 107.8 187 41.2
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 8.7e-22 107.8 186 41.4
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.1e-21 107.5 185 41.1
Migut.K00106 Erythranthe guttata HOM05D004475 ORTHO05D005235 1.1e-21 107.5 188 44.1
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 1.5e-21 107.1 183 40.4
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 1.5e-21 107.1 186 39.8
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 2.5e-21 106.3 186 41.4
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 3.3e-21 105.9 152 44.1
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 7.3e-21 104.8 185 40.0
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 7.3e-21 104.8 240 35.8
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 9.6e-21 104.4 178 41.0
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 1.6e-20 103.6 185 40.5
Sed0026196 Sechium edule HOM05D004475 ORTHO05D005235 2.1e-20 103.2 188 38.8
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 3.6e-20 102.4 185 44.3
arahy.Tifrunner.gnm1.ann1.65IVB9 Arachis hypogaea HOM05D004475 ORTHO05D005235 6.2e-20 101.7 165 43.0
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 6.2e-20 101.7 184 38.6
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 8.1e-20 101.3 180 38.3
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 1.1e-19 100.9 187 40.1
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 1.1e-19 100.9 154 43.5
TWI53G0253 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 1.1e-19 100.9 155 45.2
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.4e-19 100.5 218 37.2
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 1.8e-19 100.1 178 39.9
TWI74G0419 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 5.3e-19 98.6 182 41.8
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 6.9e-19 98.2 191 39.8
TWI77G0736 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 9.0e-19 97.8 180 41.7
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 1.5e-18 97.1 191 38.7
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 1.5e-18 97.1 151 40.4
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 2.0e-18 96.7 188 38.3
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 2.0e-18 96.7 190 39.5
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 7.6e-18 94.7 131 44.3
Oeu023134.1 Olea europaea HOM05D004475 ORTHO05D005235 1.3e-17 94.0 112 50.9
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 1.7e-17 93.6 188 42.0
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 2.9e-17 92.8 178 37.1
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 2.9e-17 92.8 183 37.7
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 3.8e-17 92.4 185 37.3
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 3.8e-17 92.4 179 40.2
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 4.9e-17 92.0 112 50.0
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 4.9e-17 92.0 185 38.4
HanXRQChr10g0298201 Helianthus annuus HOM05D004475 ORTHO05D005235 8.4e-17 91.3 181 39.8
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 8.4e-17 91.3 185 38.9
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 1.4e-16 90.5 95 49.5
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 1.4e-16 90.5 95 49.5
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 1.9e-16 90.1 181 38.7
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 2.4e-16 89.7 183 38.3
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 4.2e-16 89.0 183 39.3
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 9.3e-16 87.8 184 37.0
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 9.3e-16 87.8 176 39.2
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.2e-15 87.4 177 37.3
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.2e-15 87.4 177 37.3
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 4.6e-15 85.5 177 36.7
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 8.7e-14 81.3 151 40.4
Sc19g0008500 Simmondsia chinensis HOM05D042330 ORTHO05D037608 2.5e-13 79.7 116 48.3
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 4.3e-13 79.0 101 43.6
QL02p076199 Quercus lobata HOM05D004475 ORTHO05D005235 1.6e-12 77.0 146 38.4
HPP92_017986 Vanilla planifolia HOM05D004475 ORTHO05D005235 2.1e-12 76.6 168 33.9
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 1.1e-11 74.3 141 35.5
HanXRQChr08g0209421 Helianthus annuus HOM05D004475 ORTHO05D005235 3.1e-11 72.8 155 36.1
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 4.0e-11 72.4 180 30.6
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 1.2e-10 70.9 98 41.8
Psat0s5127g0040 Pisum sativum HOM05D004475 ORTHO05D005235 1.2e-10 70.9 111 40.5
Nitab4.5_0001618g0210 Nicotiana tabacum HOM05D004475 ORTHO05D005235 3.4e-10 69.3 87 42.5
BcaB02g07614 Brassica carinata HOM05D004475 ORTHO05D005235 5.8e-10 68.6 115 40.9
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 9.9e-10 67.8 139 33.1
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 1.7e-09 67.0 181 32.6
Ca_22955_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 6.4e-09 65.1 111 41.4
Sed0018828 Sechium edule HOM05D004475 ORTHO05D005235 6.4e-09 65.1 172 34.9
Glyma.10G001550 Glycine max HOM05D004475 ORTHO05D005235 1.4e-08 63.9 77 50.6
A04p03220 Brassica napus HOM05D004475 ORTHO05D005235 5.5e-08 62.0 44 65.9
BraA04t16044Z Brassica rapa HOM05D004475 ORTHO05D005235 5.5e-08 62.0 44 65.9
TAR623G0096 Trochodendron aralioides HOM05D004475 ORTHO05D005235 5.5e-08 62.0 39 71.8
Zm00001eb301150 Zea mays HOM05D004475 ORTHO05D005235 1.2e-07 60.8 96 42.7
Ca_22428_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 2.7e-07 59.7 39 71.8
QL07p004140 Quercus lobata HOM05D004475 ORTHO05D005235 3.5e-07 59.3 39 71.8
Zm00001eb317650 Zea mays HOM05D004475 ORTHO05D005235 4.6e-07 58.9 96 42.7
Zm00001eb379540 Zea mays HOM05D004475 ORTHO05D005235 4.6e-07 58.9 96 42.7
BcaC02g09926 Brassica carinata HOM05D004475 ORTHO05D005235 6.0e-07 58.5 38 65.8
Os04g0470300 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 3.0e-06 56.2 97 42.3
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 5.1e-06 55.5 97 35.1


User provided reference genes

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