Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 0.0e+00 1212.6 612 100.0
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 0.0e+00 1206.8 612 99.5
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.5e-206 722.6 618 64.7
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 2.0e-200 703.0 617 61.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 6.2e-197 691.4 618 61.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.3e-196 689.5 581 65.2
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 3.5e-192 675.6 614 61.2
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.6e-155 553.1 618 52.4
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-142 511.1 405 68.6
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.6e-136 490.7 608 50.3
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 3.0e-135 486.5 608 48.5
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 3.9e-135 486.1 623 47.8
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 3.3e-134 483.0 620 48.7
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 7.2e-129 465.3 620 47.6
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 7.9e-128 461.8 628 45.9
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 1.0e-127 461.5 615 47.6
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.4e-126 456.1 616 46.6
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 7.4e-126 455.3 616 46.8
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 9.7e-126 454.9 624 46.5
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-124 451.1 616 46.6
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.5e-121 441.0 505 52.1
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.4e-119 434.5 591 46.9
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.8e-119 434.1 618 43.9
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.3e-119 433.7 618 44.7
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.8e-119 431.8 619 44.6
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.4e-118 429.5 617 43.3
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 7.5e-118 428.7 617 43.3
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.8e-117 426.0 618 44.7
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 6.3e-117 425.6 603 42.5
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.1e-116 424.9 615 43.7
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 7.0e-116 422.2 632 42.6
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.2e-115 421.4 606 44.2
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 2.7e-115 420.2 601 43.4
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 4.5e-115 419.5 569 45.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.7e-114 417.5 599 43.2
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 2.2e-114 417.2 609 44.3
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 5.0e-114 416.0 618 42.9
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.2e-113 412.9 616 42.2
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 5.5e-113 412.5 615 43.4
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 7.2e-113 412.1 615 41.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.2e-112 411.4 601 41.4
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 8.8e-111 405.2 640 41.9
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 4.4e-110 402.9 591 43.5
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.7e-109 401.0 601 40.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 3.7e-109 399.8 589 43.5
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 4.8e-109 399.4 618 42.1
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 5.9e-107 392.5 615 42.6
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.7e-106 391.0 548 46.0
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 8.6e-106 388.7 594 42.1
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.5e-105 387.9 593 42.0
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.9e-105 387.5 618 41.3
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 9.5e-105 385.2 599 41.4
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.6e-104 384.4 609 41.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.0e-103 381.7 593 41.8
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.8e-103 380.9 593 41.8
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.0e-103 380.2 424 53.1
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 5.2e-103 379.4 597 42.2
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 5.2e-103 379.4 597 40.5
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.7e-101 374.4 606 42.1
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 9.2e-100 368.6 598 39.6
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 1.2e-99 368.2 612 41.3
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.2e-99 368.2 596 40.6
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.0e-98 365.2 600 41.2
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.5e-97 360.5 592 41.4
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 3.3e-97 360.1 593 40.6
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 9.5e-97 358.6 608 38.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.4e-95 354.8 611 39.1
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 3.0e-95 353.6 600 40.0
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 4.0e-95 353.2 595 39.8
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 6.8e-95 352.4 626 37.7
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.6e-94 350.5 617 38.7
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.4e-94 350.1 603 39.0
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 4.4e-94 349.7 592 40.9
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.7e-93 347.8 622 40.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.9e-93 347.1 618 38.5
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.9e-93 346.3 596 40.3
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.1e-92 343.2 600 39.8
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.7e-91 340.5 377 51.7
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 4.6e-91 339.7 593 38.8
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.3e-90 338.2 605 36.4
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.1e-87 328.6 674 35.9
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.2e-86 325.1 629 37.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.9e-85 319.7 378 50.8
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.6e-83 314.7 393 49.1
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 2.0e-83 314.3 611 37.3
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 4.6e-83 313.2 636 38.1
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 3.0e-82 310.5 447 43.8
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 4.3e-81 306.6 601 36.8
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.8e-80 303.9 606 36.8
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.7e-80 303.1 593 36.6
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-79 302.0 376 49.2
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 4.4e-78 296.6 590 33.1
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 5.8e-78 296.2 620 36.8
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.4e-77 292.7 592 35.0
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.2e-76 290.4 610 35.1
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.2e-76 290.4 584 32.9
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.1e-75 287.7 595 35.1
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.7e-75 287.3 359 47.1
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 4.6e-75 286.6 610 34.3
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.0e-74 285.4 590 33.1
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.0e-74 285.4 584 33.6
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.3e-74 285.0 592 32.9
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.9e-74 283.5 591 34.9
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-73 282.0 592 32.6
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.1e-73 282.0 592 32.6
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.5e-73 281.6 590 32.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.5e-73 281.6 601 35.8
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 2.5e-73 280.8 592 32.9
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.8e-71 274.6 593 32.4
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.4e-71 274.2 584 33.2
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 3.1e-71 273.9 370 47.6
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 3.4e-70 270.4 596 33.6
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 4.9e-69 266.5 594 34.3
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.4e-68 264.2 593 34.7
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 4.1e-68 263.5 589 34.6
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 5.4e-68 263.1 591 35.0
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.6e-67 260.0 603 34.2
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.7e-66 258.1 589 34.1
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 6.6e-66 256.1 590 31.4
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.0e-62 244.6 535 31.6
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.2e-61 241.1 220 59.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 4.9e-61 240.0 618 32.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.1e-60 238.8 300 48.7
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 4.2e-60 236.9 551 34.3
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 6.9e-55 219.5 622 30.4
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.5e-54 218.4 245 48.6
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.0e-54 218.0 524 34.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 2.4e-52 211.1 619 30.4
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.3e-50 205.3 622 29.7
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 5.5e-44 183.3 142 66.2
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.8e-40 171.0 343 36.4
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.1e-31 142.5 587 27.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.0e-29 133.7 686 26.1
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 6.1e-27 126.7 103 57.3
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 4.5e-14 84.0 384 25.3
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.4e-07 61.6 463 22.5


User provided reference genes

Program Settings