Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 2.0e-258 895.2 425 100.0
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 3.2e-216 755.0 425 82.6
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 4.6e-215 751.1 425 81.2
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.3e-209 733.0 424 78.3
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 2.9e-209 731.9 425 83.1
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 4.9e-209 731.1 419 79.5
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.3e-206 723.0 427 76.8
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 1.3e-206 723.0 422 78.4
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 1.3e-206 723.0 425 76.7
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 5.0e-206 721.1 420 79.0
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 4.3e-205 718.0 425 75.8
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 5.2e-203 711.1 422 77.7
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 2.6e-202 708.8 425 77.4
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 7.5e-202 707.2 421 76.5
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 9.9e-202 706.8 417 78.2
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 9.9e-202 706.8 425 75.1
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.2e-201 705.7 425 74.4
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 1.9e-200 702.6 408 83.8
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 2.4e-200 702.2 422 74.9
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.4e-200 702.2 418 79.7
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 3.2e-200 701.8 418 76.8
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 1.2e-199 699.9 425 75.8
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.6e-199 698.0 418 77.5
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.7e-198 696.0 416 76.9
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 3.0e-198 695.3 421 78.4
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 1.9e-197 692.6 425 75.8
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.5e-197 692.2 419 75.7
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 7.3e-197 690.6 425 75.5
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 9.5e-197 690.3 426 75.4
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.2e-196 689.9 421 75.8
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.6e-196 689.5 425 73.6
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.6e-196 689.5 420 75.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.6e-196 689.5 420 75.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.6e-196 689.5 420 75.7
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.8e-196 688.7 418 77.0
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.1e-195 686.8 416 75.2
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.4e-195 685.6 420 75.5
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 8.9e-195 683.7 419 74.7
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.0e-194 682.6 418 75.1
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.6e-194 682.2 420 75.0
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 9.9e-194 680.2 420 74.8
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 1.7e-193 679.5 426 74.4
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.2e-193 679.1 421 75.3
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.9e-193 678.7 418 73.2
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 4.9e-193 677.9 422 75.1
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 1.9e-192 676.0 418 75.1
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 3.2e-192 675.2 416 75.2
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.1e-191 672.5 420 73.8
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 6.0e-191 671.0 416 73.8
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.0e-190 670.2 425 70.8
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 2.3e-190 669.1 419 74.7
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.9e-190 668.3 425 70.6
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.9e-189 666.0 420 72.1
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 3.3e-189 665.2 430 73.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 8.1e-188 660.6 406 72.9
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 1.4e-187 659.8 415 74.9
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.8e-187 659.4 421 73.2
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.2e-186 656.8 417 74.8
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 3.8e-185 651.7 416 72.1
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 6.4e-185 651.0 425 69.4
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 8.4e-185 650.6 427 70.3
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 1.1e-184 650.2 414 72.7
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 1.1e-184 650.2 414 72.7
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 4.2e-184 648.3 416 71.9
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 9.3e-184 647.1 416 71.9
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 2.7e-183 645.6 422 72.0
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 2.7e-183 645.6 418 71.5
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 4.6e-183 644.8 416 71.4
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 6.0e-183 644.4 416 71.4
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 7.8e-183 644.0 416 71.9
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 7.8e-183 644.0 419 72.3
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 2.3e-182 642.5 418 71.5
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.0e-182 642.1 419 70.4
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 3.0e-182 642.1 418 72.2
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 6.6e-182 641.0 417 70.3
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.1e-181 640.2 422 70.1
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.3e-181 638.3 394 73.1
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 4.3e-181 638.3 418 71.1
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.6e-180 636.3 418 70.8
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 9.0e-179 630.6 425 68.7
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 1.2e-178 630.2 425 68.7
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 2.0e-178 629.4 426 68.5
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 3.2e-176 622.1 415 68.7
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 4.2e-176 621.7 414 69.3
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.2e-175 620.2 385 74.0
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 7.9e-175 617.5 425 69.4
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 7.9e-175 617.5 419 69.5
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 7.4e-173 610.9 416 65.9
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.8e-172 609.0 411 68.9
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.1e-171 607.1 420 68.6
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.8e-171 606.3 419 68.7
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 4.0e-171 605.1 419 68.5
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.6e-170 602.4 347 79.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.1e-168 597.0 416 65.9
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 2.9e-161 572.4 339 76.7
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.5e-136 489.6 426 58.9
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.7e-135 485.3 425 56.9
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 5.2e-134 481.9 396 55.6
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 4.8e-132 475.3 420 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 9.1e-131 471.1 383 57.4
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 2.2e-121 439.9 303 66.7
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 8.0e-119 431.4 328 58.8
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 1.0e-113 414.5 375 56.8
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 6.1e-103 378.6 227 76.7
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.2e-100 370.2 249 68.7
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 5.4e-99 365.5 204 82.4
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 2.3e-97 360.1 313 54.0
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.2e-85 321.2 344 45.1
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 9.9e-85 318.2 191 74.3
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.1e-83 314.7 389 41.4
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 4.3e-80 302.8 219 67.1
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 8.7e-73 278.5 339 41.3
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.2e-68 263.8 151 78.8
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 4.2e-67 259.6 151 77.5
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 4.0e-62 243.0 164 72.6
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 1.7e-52 211.1 182 57.1
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 3.5e-50 203.4 174 55.2
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.0e-44 185.3 425 31.5
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 2.6e-21 107.5 78 64.1
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 1.1e-19 102.1 73 60.3
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 6.3e-15 86.3 89 50.6
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 5.3e-14 83.2 57 73.7
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.6e-13 80.9 41 85.4
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.7e-12 78.2 269 23.4
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.1e-11 75.5 309 23.0
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.5e-11 74.3 269 23.0
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.5e-11 74.3 267 22.8
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.2e-11 73.9 269 23.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 7.2e-11 72.8 267 22.8
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 7.2e-11 72.8 269 22.7
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 9.4e-11 72.4 279 24.4
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.2e-10 72.0 260 23.8
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.1e-10 71.2 287 23.3
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 2.1e-10 71.2 282 24.1
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.1e-10 71.2 267 22.5
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.7e-10 70.9 269 22.7
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.6e-10 70.5 260 23.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 4.7e-10 70.1 234 23.1
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 4.7e-10 70.1 236 23.3
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 4.7e-10 70.1 268 23.5
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.3e-09 67.8 234 21.8
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 4.0e-09 67.0 333 22.8
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.5e-08 65.1 234 22.6
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 5.7e-08 63.2 274 23.0
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 9.7e-08 62.4 136 27.9


User provided reference genes

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