Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012228 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 7.4e-92 340.5 170 100.0
CSS0031764 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.3e-64 250.0 215 66.0
CSS0006107 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 5.7e-60 234.6 215 62.3
Dinv37275 Davidia involucrata HOM05D005011 ORTHO05D006443 5.4e-58 228.0 215 60.5
Hma1.2p1_0614F.1_g189520 Hydrangea macrophylla HOM05D005011 ORTHO05D006443 1.6e-57 226.5 215 59.5
Lj2A111T58 Lonicera japonica HOM05D005011 ORTHO05D006443 2.0e-57 226.1 215 59.5
Dinv35745 Davidia involucrata HOM05D005011 ORTHO05D006443 3.5e-57 225.3 215 60.0
GSVIVG01025659001 Vitis vinifera HOM05D005011 ORTHO05D006443 4.5e-57 224.9 215 59.1
Gohir.D01G204500 Gossypium hirsutum HOM05D005011 ORTHO05D006443 5.9e-57 224.6 215 58.6
Gorai.002G248700 Gossypium raimondii HOM05D005011 ORTHO05D006443 5.9e-57 224.6 215 58.6
Rhsim05G0182800 Rhododendron simsii HOM05D005011 ORTHO05D006443 5.9e-57 224.6 215 59.5
TWI53G1318 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 5.9e-57 224.6 215 59.1
MSTRG.26712 Avicennia marina HOM05D005011 ORTHO05D006443 1.7e-56 223.0 215 57.7
CSS0037236 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.7e-56 223.0 215 60.9
Duzib128G0881 Durio zibethinus HOM05D005011 ORTHO05D006443 1.7e-56 223.0 215 59.5
vmacro20042 Vaccinium macrocarpon HOM05D005011 ORTHO05D006443 2.3e-56 222.6 215 59.5
TWI74G0245 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 2.9e-56 222.2 215 58.1
TAR623G0402 Trochodendron aralioides HOM05D005011 ORTHO05D006443 2.9e-56 222.2 215 59.1
CiPaw.09G177600 Carya illinoinensis HOM05D005011 ORTHO05D006443 3.8e-56 221.9 214 58.4
ECA238G1048 Erigeron canadensis HOM05D005011 ORTHO05D006443 3.8e-56 221.9 215 57.7
Cpa.g.sc45.60 Carica papaya HOM05D005011 ORTHO05D006443 5.0e-56 221.5 215 57.7
Gohir.A01G215700 Gossypium hirsutum HOM05D005011 ORTHO05D006443 5.0e-56 221.5 215 58.1
Gohir.A09G150600 Gossypium hirsutum HOM05D005011 ORTHO05D006443 6.6e-56 221.1 215 58.1
SGA_v2.0_scaffold452G51844 Striga asiatica HOM05D005011 ORTHO05D006443 6.6e-56 221.1 215 56.7
Cfa017534 Carpinus fangiana HOM05D005011 ORTHO05D006443 8.6e-56 220.7 215 58.1
Haze_20614 Corylus avellana HOM05D005011 ORTHO05D006443 8.6e-56 220.7 215 58.1
MELO3C014249.2 Cucumis melo HOM05D005011 ORTHO05D006443 8.6e-56 220.7 215 58.1
Thecc.05G057500 Theobroma cacao HOM05D005011 ORTHO05D006443 8.6e-56 220.7 215 58.6
Nn2g13067 Nelumbo nucifera HOM05D005011 ORTHO05D006443 1.1e-55 220.3 215 57.7
CAN.G888.19 Capsicum annuum HOM05D005011 ORTHO05D006443 1.5e-55 219.9 215 59.1
CsaV3_6G039440 Cucumis sativus L. HOM05D005011 ORTHO05D006443 1.9e-55 219.5 215 58.1
COL.COLO4_27042 Corchorus olitorius HOM05D005011 ORTHO05D006443 2.5e-55 219.2 215 57.2
Peaxi162Scf00182g00120 Petunia axillaris HOM05D005011 ORTHO05D006443 2.5e-55 219.2 215 58.1
Prupe.6G238400 Prunus persica HOM05D005011 ORTHO05D006443 2.5e-55 219.2 215 57.7
Hund20209 Selenicereus undatus HOM05D005011 ORTHO05D006443 2.5e-55 219.2 215 57.7
ClCG04G008930 Citrullus lanatus HOM05D005011 ORTHO05D006443 3.3e-55 218.8 215 57.2
Sed0021094 Sechium edule HOM05D005011 ORTHO05D006443 3.3e-55 218.8 215 57.7
Atru.chr8.1881 Acer truncatum HOM05D005011 ORTHO05D006443 4.3e-55 218.4 214 57.9
Duzib106G1740 Durio zibethinus HOM05D005011 ORTHO05D006443 4.3e-55 218.4 215 57.7
Gohir.D09G146300 Gossypium hirsutum HOM05D005011 ORTHO05D006443 4.3e-55 218.4 215 57.7
MD04G1100100 Malus domestica HOM05D005011 ORTHO05D006443 4.3e-55 218.4 215 57.7
Duzib093G0219 Durio zibethinus HOM05D005011 ORTHO05D006443 5.6e-55 218.0 215 57.2
Nitab4.5_0005150g0050 Nicotiana tabacum HOM05D005011 ORTHO05D006443 7.3e-55 217.6 215 58.1
PGSC0003DMG400001752 Solanum tuberosum HOM05D005011 ORTHO05D006443 9.5e-55 217.2 215 58.6
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 1.2e-54 216.9 215 56.7
Lsat_1_v5_gn_2_108740 Lactuca sativa HOM05D005011 ORTHO05D006443 1.6e-54 216.5 215 56.3
PGR142G0484 Punica granatum HOM05D005011 ORTHO05D006443 1.6e-54 216.5 215 56.7
Eucgr.K03238 Eucalyptus grandis HOM05D005011 ORTHO05D006443 2.1e-54 216.1 215 56.7
Gorai.006G167500 Gossypium raimondii HOM05D005011 ORTHO05D006443 2.1e-54 216.1 215 57.2
Nitab4.5_0000101g0010 Nicotiana tabacum HOM05D005011 ORTHO05D006443 2.1e-54 216.1 215 57.7
Sabra16G0094100 Salix brachista HOM05D005011 ORTHO05D006443 2.8e-54 215.7 215 55.3
Solyc09g007630.3 Solanum lycopersicum HOM05D005011 ORTHO05D006443 2.8e-54 215.7 215 58.1
Sopen09g002500 Solanum pennellii HOM05D005011 ORTHO05D006443 2.8e-54 215.7 215 58.1
Potri.016G088600 Populus trichocarpa HOM05D005011 ORTHO05D006443 3.6e-54 215.3 215 55.8
Sc20g0005180 Simmondsia chinensis HOM05D005011 ORTHO05D006443 3.6e-54 215.3 215 56.3
TAR636G2418 Trochodendron aralioides HOM05D005011 ORTHO05D006443 3.6e-54 215.3 215 57.7
Cc06_g03820 Coffea canephora HOM05D005011 ORTHO05D006443 4.7e-54 214.9 215 56.7
FvH4_6g15690 Fragaria vesca HOM05D005011 ORTHO05D006443 4.7e-54 214.9 215 55.8
FAN14G4454 Fragaria x ananassa HOM05D005011 ORTHO05D006443 4.7e-54 214.9 215 55.8
Ciclev10011610m.g Citrus clementina HOM05D005011 ORTHO05D006443 6.1e-54 214.5 215 56.7
AUR62040051 Chenopodium quinoa HOM05D005011 ORTHO05D006443 8.0e-54 214.2 215 57.7
MD12G1120200 Malus domestica HOM05D005011 ORTHO05D006443 8.0e-54 214.2 215 56.7
QL07p044722 Quercus lobata HOM05D005011 ORTHO05D006443 8.0e-54 214.2 215 57.2
Aqoxy4G03250 Aquilegia oxysepala HOM05D005011 ORTHO05D006443 1.0e-53 213.8 215 55.8
CANSAT80G2737 Cannabis sativa HOM05D005011 ORTHO05D006443 1.0e-53 213.8 215 54.9
Manes.08G005800 Manihot esculenta HOM05D005011 ORTHO05D006443 1.0e-53 213.8 215 56.7
FAN05G4704 Fragaria x ananassa HOM05D005011 ORTHO05D006443 1.4e-53 213.4 215 55.3
FAN09G2426 Fragaria x ananassa HOM05D005011 ORTHO05D006443 1.4e-53 213.4 215 54.9
HanXRQChr07g0195601 Helianthus annuus HOM05D005011 ORTHO05D006443 1.4e-53 213.4 215 54.9
Manes.09G069500 Manihot esculenta HOM05D005011 ORTHO05D006443 1.4e-53 213.4 214 56.5
Oeu014965.1 Olea europaea HOM05D005011 ORTHO05D006443 1.4e-53 213.4 215 56.3
FAN02G2869 Fragaria x ananassa HOM05D005011 ORTHO05D006443 1.8e-53 213.0 215 55.3
EL10Ac7g16537 Beta vulgaris HOM05D005011 ORTHO05D006443 4.0e-53 211.8 215 55.8
RcHm_v2.0_Chr3g0469391 Rosa chinensis HOM05D005011 ORTHO05D006443 4.0e-53 211.8 215 55.3
Sed0004997 Sechium edule HOM05D005011 ORTHO05D006443 4.0e-53 211.8 215 56.7
Lj1g0002210 Lotus japonicus HOM05D005011 ORTHO05D006443 6.8e-53 211.1 215 55.3
unitig_0.g690 Utricularia gibba HOM05D005011 ORTHO05D006443 8.9e-53 210.7 215 54.4
arahy.Tifrunner.gnm1.ann1.P0ZPTX Arachis hypogaea HOM05D005011 ORTHO05D006443 1.5e-52 209.9 215 55.3
Ah.15g092230 Amaranthus hybridus HOM05D005011 ORTHO05D006443 5.7e-52 208.0 215 55.8
DCAR_020841 Daucus carota HOM05D005011 ORTHO05D006443 1.3e-51 206.8 215 53.5
Lalb_Chr20g0112801 Lupinus albus HOM05D005011 ORTHO05D006443 1.3e-51 206.8 215 54.4
Lalb_Chr25g0289171 Lupinus albus HOM05D005011 ORTHO05D006443 1.7e-51 206.5 215 54.9
Ca_08838_v3 Cicer arietinum L. HOM05D005011 ORTHO05D006443 2.2e-51 206.1 214 54.2
Lalb_Chr01g0018931 Lupinus albus HOM05D005011 ORTHO05D006443 2.2e-51 206.1 215 54.0
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.9e-51 205.7 215 53.5
ATR0314G021 Amborella trichopoda HOM05D005011 ORTHO05D006443 3.7e-51 205.3 215 54.4
Phvul.001G176300 Phaseolus vulgaris HOM05D005011 ORTHO05D006443 3.7e-51 205.3 215 54.4
Glyma.19G180600 Glycine max HOM05D005011 ORTHO05D006443 6.4e-51 204.5 215 54.0
Aa31LG1G21920 Aethionema arabicum HOM05D005011 ORTHO05D006443 1.1e-50 203.8 215 54.4
DCAR_009276 Daucus carota HOM05D005011 ORTHO05D006443 1.1e-50 203.8 215 53.5
Glyma.03G179800 Glycine max HOM05D005011 ORTHO05D006443 1.1e-50 203.8 215 54.0
HPP92_025091 Vanilla planifolia HOM05D005011 ORTHO05D006443 1.1e-50 203.8 215 54.9
Medtr7g101070 Medicago truncatula HOM05D005011 ORTHO05D006443 1.8e-50 203.0 214 53.7
Zm00001eb362030 Zea mays HOM05D005011 ORTHO05D006443 1.8e-50 203.0 215 54.4
PSO339G5285 Papaver somniferum HOM05D005011 ORTHO05D006443 2.4e-50 202.6 215 52.6
VMungo1383G1126 Vigna mungo HOM05D005011 ORTHO05D006443 3.2e-50 202.2 215 53.5
Thhalv10013408m.g Eutrema salsugineum HOM05D005011 ORTHO05D006443 5.4e-50 201.4 215 54.4
SHI12530 Sapria himalayana HOM05D005011 ORTHO05D006443 5.4e-50 201.4 215 52.6
CARHR084180 Cardamine hirsuta HOM05D005011 ORTHO05D006443 1.2e-49 200.3 215 54.4
TPR.G18270 Trifolium pratense HOM05D005011 ORTHO05D006443 1.2e-49 200.3 214 53.3
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 1.6e-49 199.9 230 51.7
BcaC06g32036 Brassica carinata HOM05D005011 ORTHO05D006443 2.0e-49 199.5 215 53.5
A10p32770 Brassica napus HOM05D005011 ORTHO05D006443 2.0e-49 199.5 215 53.5
C09p73640 Brassica napus HOM05D005011 ORTHO05D006443 2.0e-49 199.5 215 53.5
BolC9t60094H Brassica oleracea HOM05D005011 ORTHO05D006443 2.0e-49 199.5 215 53.5
PSO063G2699 Papaver somniferum HOM05D005011 ORTHO05D006443 2.0e-49 199.5 215 53.0
Os02g0195300 Oryza sativa ssp. japonica HOM05D005011 ORTHO05D006443 3.5e-49 198.7 215 53.0
THA.LOC104816331 Tarenaya hassleriana HOM05D005011 ORTHO05D006443 3.5e-49 198.7 215 52.6
BraA10t45311Z Brassica rapa HOM05D005011 ORTHO05D006443 4.6e-49 198.4 215 53.0
Sp6g39560 Schrenkiella parvula HOM05D005011 ORTHO05D006443 4.6e-49 198.4 215 53.5
CARHR210200 Cardamine hirsuta HOM05D005011 ORTHO05D006443 7.8e-49 197.6 215 52.6
SEGI_03688 Sequoiadendron giganteum HOM05D005011 ORTHO05D006443 7.8e-49 197.6 215 52.1
Carub.0006s0195 Capsella rubella HOM05D005011 ORTHO05D006443 3.0e-48 195.7 215 52.6
Aa31LG3G2190 Aethionema arabicum HOM05D005011 ORTHO05D006443 8.6e-48 194.1 215 52.6
AL6G12440 Arabidopsis lyrata HOM05D005011 ORTHO05D006443 4.3e-47 191.8 215 51.6
AT5G03160 Arabidopsis thaliana HOM05D005011 ORTHO05D006443 5.6e-47 191.4 215 51.2
Actinidia19688 Actinidia chinensis HOM05D005011 ORTHO05D006443 1.2e-46 190.3 175 62.9
Psat3g044040 Pisum sativum HOM05D005011 ORTHO05D006443 3.6e-46 188.7 214 50.5
Os01g0977200 Oryza sativa ssp. japonica HOM05D005011 ORTHO05D006443 9.2e-42 174.1 188 53.2
Oeu059978.1 Olea europaea HOM05D005011 ORTHO05D006443 2.0e-41 172.9 215 49.3
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 2.8e-38 162.5 215 45.1
Mapoly0115s0071 Marchantia polymorpha HOM05D005011 ORTHO05D006443 1.4e-37 160.2 214 44.4
CBR_g32064 Chara braunii HOM05D005011 ORTHO05D006443 7.1e-34 147.9 214 39.3
AUR62043149 Chenopodium quinoa HOM05D005011 ORTHO05D006443 8.6e-32 141.0 163 50.9
SMO118G0210 Selaginella moellendorffii HOM05D005011 ORTHO05D006443 5.8e-28 128.3 215 39.5
ATR0314G006 Amborella trichopoda HOM05D005011 ORTHO05D006443 7.6e-28 127.9 146 52.1
SalBow5G2506 Salvia bowleyana HOM05D005011 ORTHO05D006443 2.0e-12 76.6 101 41.6
SalBow5G5390 Salvia bowleyana HOM05D005011 ORTHO05D006443 2.0e-12 76.6 101 41.6
SalBow5G1413 Salvia bowleyana HOM05D005011 ORTHO05D006443 3.4e-12 75.9 54 72.2
BcaB02g11526 Brassica carinata HOM05D005011 ORTHO05D006443 3.8e-11 72.4 54 74.1
Cfa026011 Carpinus fangiana HOM05D000868 ORTHO05D006443 4.6e-09 65.5 194 27.8
Cre01.g032500 Chlamydomonas reinhardtii HOM05D005011 ORTHO05D006443 4.6e-09 65.5 215 26.5
Aa31LG4G10620 Aethionema arabicum HOM05D005011 ORTHO05D006443 2.8e-06 56.2 48 62.5
MBI05_g35615_MAGBIO Magnolia biondii HOM05D005011 ORTHO05D006443 6.2e-06 55.1 34 79.4


User provided reference genes

Program Settings