Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.8e-82 308.1 157 100.0
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.2e-49 198.7 162 72.2
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.4e-39 166.8 110 78.2
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.4e-39 166.8 105 81.0
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 3.9e-39 165.2 110 79.1
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 2.0e-38 162.9 110 77.3
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 4.4e-38 161.8 105 78.1
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 8.2e-37 157.5 110 75.5
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 1.8e-36 156.4 110 75.5
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 4.1e-36 155.2 110 74.5
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 5.3e-36 154.8 109 73.4
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 5.3e-36 154.8 105 78.1
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 9.1e-36 154.1 110 74.5
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 9.1e-36 154.1 110 69.1
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.2e-35 153.7 104 76.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.6e-35 153.3 108 72.2
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.6e-35 153.3 105 73.3
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 2.6e-35 152.5 109 71.6
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.5e-35 152.1 109 70.6
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.5e-35 151.8 110 73.6
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.5e-35 151.8 110 73.6
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.0e-34 150.6 105 76.2
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.2e-34 149.4 104 74.0
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.0e-34 148.3 111 70.3
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 5.0e-34 148.3 105 70.5
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 8.5e-34 147.5 110 69.1
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 8.5e-34 147.5 112 70.5
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.1e-33 147.1 109 70.6
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.1e-33 147.1 104 71.2
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.5e-33 146.7 105 70.5
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.9e-33 146.4 112 67.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 1.9e-33 146.4 105 73.3
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 2.5e-33 146.0 110 66.4
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 4.2e-33 145.2 104 69.2
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 5.5e-33 144.8 118 62.7
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 7.2e-33 144.4 109 67.9
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 9.4e-33 144.1 110 66.4
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.1e-32 142.9 110 69.1
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 2.1e-32 142.9 110 63.6
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 2.7e-32 142.5 109 67.0
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 2.7e-32 142.5 110 65.5
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 4.7e-32 141.7 111 64.9
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 1.0e-31 140.6 118 64.4
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 1.8e-31 139.8 110 62.7
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.8e-31 139.8 105 64.8
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.8e-31 139.8 105 65.7
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.8e-31 139.8 110 66.4
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 2.3e-31 139.4 110 67.3
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 2.3e-31 139.4 105 65.7
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 2.3e-31 139.4 110 61.8
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 3.0e-31 139.0 105 64.8
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 4.0e-31 138.7 112 66.1
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 5.2e-31 138.3 110 64.5
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 5.2e-31 138.3 109 66.1
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 6.7e-31 137.9 110 67.3
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 8.8e-31 137.5 110 60.9
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 8.8e-31 137.5 109 64.2
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.2e-30 137.1 105 63.8
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 2.0e-30 136.3 105 62.9
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 2.0e-30 136.3 105 62.9
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-30 136.3 98 71.4
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-30 136.3 98 71.4
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 2.6e-30 136.0 107 64.5
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 2.6e-30 136.0 105 63.8
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.6e-30 136.0 112 67.0
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 2.6e-30 136.0 110 61.8
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 2.6e-30 136.0 109 65.1
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 2.6e-30 136.0 105 62.9
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.3e-30 135.6 110 67.3
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 4.4e-30 135.2 109 64.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 5.7e-30 134.8 105 61.9
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 5.7e-30 134.8 104 66.3
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 7.5e-30 134.4 105 63.8
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 2.2e-29 132.9 110 60.0
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 2.8e-29 132.5 103 65.0
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.8e-29 132.5 103 66.0
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.7e-29 132.1 108 69.4
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 3.7e-29 132.1 102 67.6
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 5.3e-28 128.3 104 61.5
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 7.0e-28 127.9 109 59.6
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 9.1e-28 127.5 109 56.9
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 9.1e-28 127.5 106 62.3
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.6e-27 126.7 109 56.0
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 1.6e-27 126.7 105 62.9
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.5e-27 125.6 107 67.3
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.5e-27 125.2 109 56.0
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 7.7e-27 124.4 102 60.8
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 7.7e-27 124.4 102 60.8
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.0e-26 124.0 102 60.8
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 1.3e-26 123.6 103 61.2
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.7e-26 123.2 102 61.8
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 3.8e-26 122.1 88 69.3
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.8e-26 122.1 109 55.0
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 5.0e-26 121.7 110 61.8
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 5.0e-26 121.7 102 60.8
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.5e-25 120.2 102 61.8
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.5e-25 120.2 72 86.1
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 4.2e-25 118.6 99 58.6
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 4.2e-25 118.6 104 59.6
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 5.5e-25 118.2 102 59.8
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 9.4e-25 117.5 105 59.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.7e-24 115.9 111 54.1
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 3.6e-24 115.5 104 54.8
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.6e-24 115.5 111 54.1
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.6e-24 115.5 97 67.0
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 6.1e-24 114.8 109 52.3
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 8.0e-24 114.4 104 54.8
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 8.0e-24 114.4 104 54.8
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 8.0e-24 114.4 104 54.8
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 8.0e-24 114.4 124 51.6
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.0e-23 114.0 125 55.2
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 6.8e-23 111.3 96 56.2
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 8.8e-23 110.9 83 71.1
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.2e-22 110.5 104 54.8
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.5e-22 110.2 71 81.7
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 2.0e-22 109.8 104 53.8
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.6e-22 109.4 104 51.0
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 3.4e-22 109.0 96 60.4
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 4.4e-22 108.6 104 51.9
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 5.7e-22 108.2 104 53.8
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 7.5e-22 107.8 109 54.1
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 1.3e-21 107.1 104 52.9
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.3e-21 107.1 104 52.9
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.7e-21 106.7 104 52.9
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.7e-21 106.7 104 52.9
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 1.7e-21 106.7 104 57.7
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 2.2e-21 106.3 104 52.9
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 2.8e-21 105.9 104 52.9
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.8e-21 105.9 104 52.9
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 2.8e-21 105.9 104 52.9
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 6.3e-21 104.8 103 56.3
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.1e-20 104.0 104 51.9
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-19 100.5 115 51.3
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.2e-19 100.5 102 48.0
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.7e-19 99.4 76 73.7
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 3.5e-19 99.0 109 50.5
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.9e-19 98.2 105 55.2
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 2.5e-17 92.8 109 53.2
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.5e-17 92.8 105 47.6
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 9.5e-17 90.9 65 72.3
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.6e-16 89.0 102 47.1
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 6.1e-16 88.2 60 73.3
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 3.0e-15 85.9 110 42.7
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 5.7e-14 81.6 56 76.8
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.7e-13 80.1 65 61.5
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 4.9e-13 78.6 102 43.1
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.4e-12 76.3 50 80.0
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.1e-12 75.9 72 56.9
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 5.4e-12 75.1 105 44.8
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 5.4e-12 75.1 105 44.8
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 7.0e-12 74.7 107 43.0
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 7.0e-12 74.7 63 65.1
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.2e-12 74.3 72 55.6
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 2.5e-09 66.2 53 62.3
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.6e-08 62.4 52 65.4


User provided reference genes

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