Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 5.2e-100 367.9 203 100.0
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 5.2e-84 314.7 207 84.5
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.2e-82 309.3 203 84.7
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 6.0e-80 301.2 209 76.6
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.7e-79 299.7 201 82.6
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 1.5e-78 296.6 202 74.8
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.3e-78 295.4 201 78.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 3.3e-78 295.4 209 72.2
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 6.2e-77 291.2 199 75.9
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 6.2e-77 291.2 201 74.1
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.4e-76 290.0 204 78.9
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.4e-76 290.0 204 70.6
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.4e-76 290.0 202 72.8
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.3e-76 289.3 205 73.2
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.1e-76 288.9 204 70.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 6.8e-76 287.7 205 71.7
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 8.9e-76 287.3 207 75.8
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.5e-75 286.6 203 71.9
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 3.4e-75 285.4 202 79.7
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 3.4e-75 285.4 201 74.6
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.4e-75 285.0 202 71.8
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 7.5e-75 284.3 202 72.8
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 7.5e-75 284.3 202 76.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 9.8e-75 283.9 202 72.8
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.7e-74 283.1 206 77.7
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 2.2e-74 282.7 205 77.6
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 3.7e-74 282.0 201 71.1
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 3.7e-74 282.0 200 72.0
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.9e-74 281.6 206 69.9
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 6.4e-74 281.2 208 71.6
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.1e-73 280.4 197 81.2
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.1e-73 280.4 201 71.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 1.4e-73 280.0 205 71.7
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.4e-73 280.0 206 69.4
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 2.4e-73 279.3 202 71.3
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 5.4e-73 278.1 206 74.8
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 5.4e-73 278.1 216 66.7
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 5.4e-73 278.1 199 76.9
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 7.1e-73 277.7 201 72.1
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 7.1e-73 277.7 201 70.6
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 9.2e-73 277.3 206 78.6
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.2e-72 276.9 205 70.2
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.6e-72 276.6 201 78.1
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 2.1e-72 276.2 203 79.3
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-72 276.2 207 69.6
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 2.1e-72 276.2 195 81.5
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 2.1e-72 276.2 207 68.6
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 6.0e-72 274.6 184 80.4
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.0e-71 273.9 203 70.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.3e-71 273.5 205 76.1
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.3e-71 273.5 211 75.8
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.7e-71 273.1 203 79.3
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 3.9e-71 271.9 206 72.3
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 3.9e-71 271.9 220 64.5
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 5.1e-71 271.6 204 70.1
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 5.1e-71 271.6 197 80.7
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 8.6e-71 270.8 201 70.6
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.1e-70 270.4 192 78.1
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.5e-70 269.2 206 68.4
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 2.5e-70 269.2 215 66.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 3.3e-70 268.9 202 68.8
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 3.3e-70 268.9 201 71.1
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 7.3e-70 267.7 204 69.1
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 9.5e-70 267.3 203 68.5
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.2e-69 266.9 201 77.1
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.2e-69 266.9 211 68.2
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 1.6e-69 266.5 181 77.3
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 2.1e-69 266.2 206 69.4
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.6e-69 265.4 207 73.4
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 3.6e-69 265.4 187 75.9
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 4.7e-69 265.0 206 68.0
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 4.7e-69 265.0 203 71.4
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 4.7e-69 265.0 201 77.1
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 4.7e-69 265.0 204 73.0
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.4e-68 263.5 197 78.2
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.8e-68 263.1 209 70.3
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 2.3e-68 262.7 202 73.3
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 3.1e-68 262.3 197 67.0
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 3.1e-68 262.3 215 64.7
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 6.8e-68 261.2 195 69.7
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.2e-67 260.4 201 65.2
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.5e-67 260.0 197 74.6
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 9.9e-67 257.3 203 72.4
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.9e-66 255.8 202 72.3
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 2.9e-66 255.8 209 67.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 4.9e-66 255.0 190 76.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.2e-65 252.3 202 71.8
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 4.1e-65 251.9 202 65.3
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 4.1e-65 251.9 202 69.3
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 4.1e-65 251.9 202 65.3
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 2.1e-64 249.6 222 61.7
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 3.5e-64 248.8 198 73.7
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 4.6e-64 248.4 193 77.7
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 6.0e-64 248.1 187 77.0
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 7.8e-64 247.7 203 69.5
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.9e-62 243.0 184 71.7
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.1e-61 239.6 206 67.0
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 3.6e-61 238.8 133 85.0
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.6e-61 238.8 133 85.0
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 4.7e-61 238.4 202 65.8
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 2.4e-60 236.1 132 82.6
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.0e-60 235.3 133 84.2
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.2e-59 233.8 189 64.0
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 9.9e-59 230.7 201 69.2
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.9e-59 230.7 195 68.7
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 2.2e-58 229.6 215 60.9
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 7.1e-57 224.6 111 90.1
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.2e-56 223.8 197 67.5
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.6e-56 223.4 132 81.1
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 6.0e-56 221.5 151 78.1
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.1e-54 217.2 113 85.8
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.4e-52 209.5 158 80.4
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 5.3e-52 208.4 180 61.1
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 9.0e-52 207.6 124 77.4
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 4.4e-51 205.3 107 88.8
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 5.4e-49 198.4 109 82.6
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.7e-47 193.4 158 63.9
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.9e-47 192.2 95 92.6
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.5e-46 190.3 91 94.5
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.0e-40 168.3 207 52.2
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 1.0e-34 151.0 82 82.9
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.9e-30 136.7 207 52.2
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.6e-29 133.7 121 57.0
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 2.8e-29 132.9 120 69.2
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 6.3e-29 131.7 101 56.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.7e-26 123.6 59 94.9
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.5e-22 110.5 93 53.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.4e-20 103.2 97 49.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-17 93.6 83 56.6
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 1.7e-13 80.5 100 42.0
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 9.1e-12 74.7 37 86.5
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.3e-10 70.9 82 47.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.2e-10 70.1 45 68.9
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 2.2e-10 70.1 82 73.2
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-09 67.8 106 46.2
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 2.3e-07 60.1 34 76.5
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 8.8e-07 58.2 83 43.4


User provided reference genes

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