Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012154 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 2.8e-149 532.3 352 100.0
CSS0025913 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 3.6e-72 276.2 423 60.5
CSS0032062 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 2.4e-68 263.5 413 55.4
Rhsim09G0024900 Rhododendron simsii HOM05D007768 ORTHO05D009831 1.6e-24 117.9 418 42.8
AL5G41420 Arabidopsis lyrata HOM05D007768 ORTHO05D009831 3.4e-22 110.2 333 41.4
CiPaw.09G024100 Carya illinoinensis HOM05D007768 ORTHO05D009831 7.5e-22 109.0 410 37.1
AT3G59510 Arabidopsis thaliana HOM05D007768 ORTHO05D009831 1.4e-20 104.8 333 40.5
TWI15G0176 Tripterygium wilfordii HOM05D007768 ORTHO05D009831 4.1e-20 103.2 352 41.8
Sc07g0009860 Simmondsia chinensis HOM05D007768 ORTHO05D009831 1.5e-17 94.7 337 41.8
Sabra02G0142500 Salix brachista HOM05D007768 ORTHO05D009831 1.9e-17 94.4 414 41.1
Sp5g03650 Schrenkiella parvula HOM05D007768 ORTHO05D009831 2.5e-17 94.0 335 39.4
Carub.0005s2624 Capsella rubella HOM05D007768 ORTHO05D009831 5.6e-17 92.8 333 39.3
Thhalv10006500m.g Eutrema salsugineum HOM05D007768 ORTHO05D009831 2.1e-16 90.9 335 39.1
CiPaw.10G021200 Carya illinoinensis HOM05D007768 ORTHO05D009831 2.8e-16 90.5 337 45.1
Gohir.A10G138600 Gossypium hirsutum HOM05D007768 ORTHO05D009831 1.8e-15 87.8 181 34.3
Gorai.011G141400 Gossypium raimondii HOM05D007768 ORTHO05D009831 1.8e-15 87.8 181 34.3
Gohir.D10G128200 Gossypium hirsutum HOM05D007768 ORTHO05D009831 4.0e-15 86.7 181 34.3
Aa31LG10G13830 Aethionema arabicum HOM05D007768 ORTHO05D009831 6.8e-15 85.9 321 41.4
Sabra17G0017200 Salix brachista HOM05D007768 ORTHO05D009831 8.9e-15 85.5 336 40.8
THA.LOC104803778 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 1.2e-14 85.1 343 39.9
Hma1.2p1_2011F.1_g311060 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 2.0e-14 84.3 334 46.1
ATR0743G119 Amborella trichopoda HOM05D007768 ORTHO05D009831 4.4e-14 83.2 350 35.7
Hma1.2p1_0886F.1_g232680 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 4.4e-14 83.2 334 46.1
C06p26230 Brassica napus HOM05D007768 ORTHO05D009831 9.8e-14 82.0 181 30.9
BolC6t37786H Brassica oleracea HOM05D007768 ORTHO05D009831 9.8e-14 82.0 181 30.9
BcaC08g44993 Brassica carinata HOM05D007768 ORTHO05D009831 3.7e-13 80.1 335 37.3
A07p24690 Brassica napus HOM05D007768 ORTHO05D009831 3.7e-13 80.1 335 37.3
BraA07t30114Z Brassica rapa HOM05D007768 ORTHO05D009831 3.7e-13 80.1 335 37.3
CARHR169890 Cardamine hirsuta HOM05D007768 ORTHO05D009831 4.9e-13 79.7 333 40.2
Thecc.04G176800 Theobroma cacao HOM05D007768 ORTHO05D009831 4.9e-13 79.7 192 29.7
BcaB02g07459 Brassica carinata HOM05D007768 ORTHO05D009831 2.4e-12 77.4 335 37.6
Cc04_g11030 Coffea canephora HOM05D007768 ORTHO05D009831 2.4e-12 77.4 142 35.9
Haze_01481 Corylus avellana HOM05D007768 ORTHO05D009831 3.2e-12 77.0 343 45.8
Lju337C6T2 Lonicera japonica HOM05D007768 ORTHO05D009831 3.2e-12 77.0 414 40.1
Cc04_g10990 Coffea canephora HOM05D007768 ORTHO05D009831 5.4e-12 76.3 142 35.2
CiPaw.02G053300 Carya illinoinensis HOM05D007768 ORTHO05D009831 9.2e-12 75.5 418 35.6
Nitab4.5_0011755g0020 Nicotiana tabacum HOM05D007768 ORTHO05D009831 1.6e-11 74.7 341 37.5
Cfa015181 Carpinus fangiana HOM05D007768 ORTHO05D009831 3.5e-11 73.6 343 44.9
Gohir.A09G211750 Gossypium hirsutum HOM05D007768 ORTHO05D009831 7.8e-11 72.4 353 42.8
Atru.chr4.1241 Acer truncatum HOM05D007768 ORTHO05D009831 1.3e-10 71.6 143 34.3
Rhsim02G0081500 Rhododendron simsii HOM05D000578 ORTHO05D000422 1.3e-10 71.6 420 41.0
Potri.017G028325 Populus trichocarpa HOM05D007768 ORTHO05D009831 1.7e-10 71.2 140 37.9
Gorai.006G229200 Gossypium raimondii HOM05D007768 ORTHO05D009831 3.9e-10 70.1 348 39.4
Dinv22750 Davidia involucrata HOM05D007768 ORTHO05D009831 8.6e-10 68.9 131 40.5
Lalb_Chr24g0396811 Lupinus albus HOM05D007768 ORTHO05D009831 8.6e-10 68.9 342 43.9
Peaxi162Scf01052g00315 Petunia axillaris HOM05D007768 ORTHO05D009831 1.1e-09 68.6 127 32.3
Potri.017G028400 Populus trichocarpa HOM05D007768 ORTHO05D009831 1.1e-09 68.6 414 39.6
SEGI_39952 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 1.5e-09 68.2 198 29.3
A04p02150 Brassica napus HOM05D007768 ORTHO05D009831 1.9e-09 67.8 140 31.4
BraA04t15942Z Brassica rapa HOM05D007768 ORTHO05D009831 1.9e-09 67.8 140 31.4
COL.COLO4_12975 Corchorus olitorius HOM05D007768 ORTHO05D009831 2.5e-09 67.4 342 39.5
Glyma.15G029600 Glycine max HOM05D007768 ORTHO05D009831 2.5e-09 67.4 59 61.0
Potri.017G028600 Populus trichocarpa HOM05D007768 ORTHO05D009831 3.3e-09 67.0 413 40.0
C04p33400 Brassica napus HOM05D007768 ORTHO05D009831 4.3e-09 66.6 139 30.2
THA.LOC104824141 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 7.3e-09 65.9 335 37.0
BcaC02g10057 Brassica carinata HOM05D007768 ORTHO05D009831 9.5e-09 65.5 139 30.2
BcaB02g08219 Brassica carinata HOM05D007768 ORTHO05D009831 2.1e-08 64.3 335 37.6
CAN.G1231.13 Capsicum annuum HOM05D007150 ORTHO05D008994 2.1e-08 64.3 314 37.6
CiPaw.01G098100 Carya illinoinensis HOM05D007768 ORTHO05D009831 2.8e-08 63.9 140 36.4
Psat6g219760 Pisum sativum HOM05D007150 ORTHO05D008994 2.8e-08 63.9 202 26.7
Duzib212G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 3.6e-08 63.5 415 35.4
FAN07G2880 Fragaria x ananassa HOM05D007768 ORTHO05D009831 3.6e-08 63.5 339 43.1
BolC4t24901H Brassica oleracea HOM05D007768 ORTHO05D009831 6.2e-08 62.8 139 29.5
HanXRQChr16g0513181 Helianthus annuus HOM05D007150 ORTHO05D008994 6.2e-08 62.8 326 35.3
Ciclev10020393m.g Citrus clementina HOM05D007768 ORTHO05D009831 8.1e-08 62.4 339 41.3
Cfa015066 Carpinus fangiana HOM05D007768 ORTHO05D009831 1.1e-07 62.0 59 59.3
FvH4_4g10920 Fragaria vesca HOM05D007768 ORTHO05D009831 1.4e-07 61.6 339 43.1
FAN12G0864 Fragaria x ananassa HOM05D007768 ORTHO05D009831 1.4e-07 61.6 339 43.1
Gohir.D09G205201 Gossypium hirsutum HOM05D007768 ORTHO05D009831 1.4e-07 61.6 358 42.2
Ah.13g072810 Amaranthus hybridus HOM05D007768 ORTHO05D009831 3.1e-07 60.5 53 58.5
DCAR_016491 Daucus carota HOM05D007768 ORTHO05D009831 3.1e-07 60.5 180 43.3
TPR.G18860 Trifolium pratense HOM05D007768 ORTHO05D009831 5.2e-07 59.7 141 25.5
FAN17G2755 Fragaria x ananassa HOM05D007768 ORTHO05D009831 6.8e-07 59.3 340 44.1
Nitab4.5_0006622g0010 Nicotiana tabacum HOM05D007768 ORTHO05D009831 6.8e-07 59.3 341 40.2
Sc25g0002590 Simmondsia chinensis HOM05D007768 ORTHO05D009831 6.8e-07 59.3 342 43.3
Medtr2g099020 Medicago truncatula HOM05D007768 ORTHO05D009831 8.9e-07 58.9 139 28.1
Ca_11085_v3 Cicer arietinum L. HOM05D007150 ORTHO05D008994 1.2e-06 58.5 182 26.9
Duzib175G0003 Durio zibethinus HOM05D007768 ORTHO05D009831 2.0e-06 57.8 193 31.6
PGSC0003DMG400007033 Solanum tuberosum HOM05D007768 ORTHO05D009831 3.4e-06 57.0 59 50.8
Duzib151G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 5.8e-06 56.2 140 30.0
Actinidia11296 Actinidia chinensis HOM05D007768 ORTHO05D009831 7.6e-06 55.8 289 24.9
CiPaw.05G010400 Carya illinoinensis HOM05D007150 ORTHO05D008994 9.9e-06 55.5 191 26.2


User provided reference genes

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