Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.3e-67 259.6 135 100.0
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.4e-53 213.0 164 72.0
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.4e-53 213.0 164 72.0
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 2.3e-40 169.1 164 60.4
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 3.5e-36 155.2 165 57.6
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 4.3e-34 148.3 165 53.9
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 6.2e-33 144.4 159 53.5
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 5.8e-31 137.9 158 50.6
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 7.6e-31 137.5 158 50.6
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.3e-30 136.7 158 52.5
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 4.9e-30 134.8 144 56.9
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 6.4e-30 134.4 165 50.9
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.1e-29 133.7 158 51.3
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.4e-29 133.3 158 49.4
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 4.2e-29 131.7 165 48.5
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 7.1e-29 131.0 169 49.1
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 7.1e-29 131.0 169 49.1
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 7.1e-29 131.0 154 51.9
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 6.0e-28 127.9 148 52.7
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.1e-26 123.6 178 46.1
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.1e-26 123.6 178 46.1
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 1.5e-26 123.2 154 50.0
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 1.9e-26 122.9 178 44.4
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 4.3e-26 121.7 175 45.1
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 4.3e-26 121.7 155 47.7
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 5.6e-26 121.3 146 50.0
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 9.6e-26 120.6 82 73.2
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 9.6e-26 120.6 148 49.3
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 4.8e-25 118.2 162 47.5
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 4.8e-25 118.2 175 45.7
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 8.1e-25 117.5 153 48.4
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 8.1e-25 117.5 171 43.3
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 2.4e-24 115.9 81 71.6
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 3.1e-24 115.5 171 45.6
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 3.1e-24 115.5 175 42.9
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 3.1e-24 115.5 175 46.3
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 5.3e-24 114.8 81 72.8
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 1.5e-23 113.2 168 44.6
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 1.5e-23 113.2 175 42.9
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 2.6e-23 112.5 163 48.5
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 3.4e-23 112.1 80 67.5
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 3.4e-23 112.1 169 45.6
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 4.5e-23 111.7 110 56.4
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 5.8e-23 111.3 81 70.4
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 5.8e-23 111.3 81 70.4
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 5.8e-23 111.3 158 46.8
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 7.6e-23 110.9 168 44.0
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 7.6e-23 110.9 82 68.3
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 7.6e-23 110.9 82 69.5
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 7.6e-23 110.9 152 48.0
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 9.9e-23 110.5 82 67.1
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 9.9e-23 110.5 126 55.6
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 9.9e-23 110.5 82 67.1
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 9.9e-23 110.5 139 48.9
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 1.3e-22 110.2 81 69.1
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 1.3e-22 110.2 81 69.1
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.3e-22 110.2 94 63.8
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 1.7e-22 109.8 158 48.1
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 1.7e-22 109.8 114 53.5
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.7e-22 109.8 162 46.9
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 1.7e-22 109.8 148 48.0
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 1.7e-22 109.8 95 61.1
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.7e-22 109.8 81 67.9
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 2.2e-22 109.4 82 65.9
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 2.2e-22 109.4 124 54.0
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 2.9e-22 109.0 159 47.2
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 3.8e-22 108.6 157 45.9
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 3.8e-22 108.6 82 64.6
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 3.8e-22 108.6 82 64.6
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 3.8e-22 108.6 82 64.6
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 3.8e-22 108.6 82 64.6
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 3.8e-22 108.6 81 66.7
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 3.8e-22 108.6 81 66.7
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 3.8e-22 108.6 81 66.7
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 4.9e-22 108.2 120 57.5
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 4.9e-22 108.2 138 47.8
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 6.4e-22 107.8 82 64.6
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 6.4e-22 107.8 152 47.4
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.4e-22 107.8 152 47.4
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 8.4e-22 107.5 183 41.0
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 8.4e-22 107.5 130 48.5
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 8.4e-22 107.5 148 47.3
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 1.1e-21 107.1 82 63.4
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.1e-21 107.1 107 57.0
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.1e-21 107.1 81 66.7
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 1.4e-21 106.7 131 49.6
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.4e-21 106.7 133 48.9
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 1.4e-21 106.7 178 41.0
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.9e-21 106.3 152 47.4
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.9e-21 106.3 152 47.4
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 3.2e-21 105.5 127 51.2
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 4.2e-21 105.1 81 64.2
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 4.2e-21 105.1 155 45.2
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 4.2e-21 105.1 81 66.7
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 4.2e-21 105.1 180 40.6
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 5.4e-21 104.8 81 66.7
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 5.4e-21 104.8 80 63.8
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 7.1e-21 104.4 81 65.4
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 9.3e-21 104.0 112 53.6
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 9.3e-21 104.0 182 40.7
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 1.2e-20 103.6 90 62.2
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 1.2e-20 103.6 81 63.0
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 7.9e-20 100.9 81 61.7
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 1.0e-19 100.5 122 51.6
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 2.5e-18 95.9 126 43.7
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 2.1e-17 92.8 121 44.6
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 2.1e-17 92.8 64 71.9
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 2.8e-17 92.4 81 55.6
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 4.8e-17 91.7 80 58.8
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 1.1e-16 90.5 81 55.6
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 6.9e-16 87.8 82 59.8
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.2e-14 82.8 82 57.3
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 1.4e-13 80.1 155 40.0
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 1.2e-12 77.0 80 47.5
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 3.5e-12 75.5 98 41.8
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 4.3e-10 68.6 78 47.4
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 3.1e-08 62.4 63 55.6


User provided reference genes

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