Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012128 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 8.5e-66 253.4 121 100.0
CSS0019942 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 7.9e-64 246.9 120 96.7
Actinidia29386 Actinidia chinensis HOM05D001653 ORTHO05D001751 8.3e-29 130.6 97 62.9
TAR381G0969 Trochodendron aralioides HOM05D001653 ORTHO05D001751 8.0e-24 114.0 99 55.6
Duzib132G0784 Durio zibethinus HOM05D001653 ORTHO05D001751 6.4e-21 104.4 104 49.0
CiPaw.03G015600 Carya illinoinensis HOM05D001653 ORTHO05D001751 1.4e-20 103.2 98 54.1
Thecc.02G014100 Theobroma cacao HOM05D001653 ORTHO05D001751 2.4e-20 102.4 104 49.0
GSVIVG01023217001 Vitis vinifera HOM05D001653 ORTHO05D001751 1.6e-19 99.8 100 49.0
Cfa008088 Carpinus fangiana HOM05D001653 ORTHO05D001751 3.5e-19 98.6 93 52.7
Gorai.008G046700 Gossypium raimondii HOM05D001653 ORTHO05D001751 4.6e-19 98.2 105 51.4
QL02p101947 Quercus lobata HOM05D001653 ORTHO05D001751 4.6e-19 98.2 100 52.0
QL02p102580 Quercus lobata HOM05D001653 ORTHO05D001751 4.6e-19 98.2 100 52.0
COL.COLO4_17691 Corchorus olitorius HOM05D001653 ORTHO05D001751 7.8e-19 97.4 104 47.1
Gohir.D12G044400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 7.8e-19 97.4 105 51.4
Dinv19433 Davidia involucrata HOM05D001653 ORTHO05D001751 1.3e-18 96.7 121 43.8
QL09p002073 Quercus lobata HOM05D001653 ORTHO05D001751 1.3e-18 96.7 98 50.0
Lj9A698T60 Lonicera japonica HOM05D001653 ORTHO05D001751 3.0e-18 95.5 78 59.0
Dinv29616 Davidia involucrata HOM05D001653 ORTHO05D001751 3.9e-18 95.1 97 49.5
Gohir.A12G045400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 8.6e-18 94.0 93 53.8
Actinidia38984 Actinidia chinensis HOM05D001653 ORTHO05D001751 1.1e-17 93.6 100 47.0
QL02p102066 Quercus lobata HOM05D001653 ORTHO05D001751 1.9e-17 92.8 81 54.3
QL02p102101 Quercus lobata HOM05D001653 ORTHO05D001751 1.9e-17 92.8 100 51.0
QL02p102618 Quercus lobata HOM05D001653 ORTHO05D001751 1.9e-17 92.8 100 51.0
Haze_10021 Corylus avellana HOM05D001653 ORTHO05D001751 2.5e-17 92.4 100 49.0
SalBow6G1873 Salvia bowleyana HOM05D001653 ORTHO05D001751 2.5e-17 92.4 99 48.5
SalBow6G5267 Salvia bowleyana HOM05D001653 ORTHO05D001751 2.5e-17 92.4 99 48.5
PGSC0003DMG400001006 Solanum tuberosum HOM05D001653 ORTHO05D001751 2.5e-17 92.4 99 45.5
Atru.chr6.388 Acer truncatum HOM05D001653 ORTHO05D001751 3.3e-17 92.0 99 49.5
Atru.chr6.438 Acer truncatum HOM05D001653 ORTHO05D001751 3.3e-17 92.0 99 49.5
Cfa004464 Carpinus fangiana HOM05D001653 ORTHO05D001751 4.3e-17 91.7 97 49.5
Eucgr.I02786 Eucalyptus grandis HOM05D001653 ORTHO05D001751 4.3e-17 91.7 87 48.3
Lj9A283T34 Lonicera japonica HOM05D001653 ORTHO05D001751 4.3e-17 91.7 93 50.5
Medtr4g134760 Medicago truncatula HOM05D001653 ORTHO05D001751 5.6e-17 91.3 80 55.0
Eucgr.F02980 Eucalyptus grandis HOM05D001653 ORTHO05D001751 7.3e-17 90.9 98 46.9
Lj4g0025919 Lotus japonicus HOM05D001653 ORTHO05D001751 7.3e-17 90.9 99 49.5
MD08G1245400 Malus domestica HOM05D001653 ORTHO05D001751 9.5e-17 90.5 107 46.7
TWI75G0255 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 9.5e-17 90.5 102 47.1
Duzib177G0515 Durio zibethinus HOM05D001653 ORTHO05D001751 1.6e-16 89.7 98 45.9
GSVIVG01036381001 Vitis vinifera HOM05D001653 ORTHO05D001751 1.6e-16 89.7 93 50.5
MD15G1440400 Malus domestica HOM05D001653 ORTHO05D001751 2.1e-16 89.4 100 49.0
Rhsim11G0121200 Rhododendron simsii HOM05D001653 ORTHO05D001751 2.1e-16 89.4 100 47.0
arahy.Tifrunner.gnm1.ann1.U9C9EB Arachis hypogaea HOM05D001653 ORTHO05D001751 2.8e-16 89.0 97 47.4
Nn5g27282 Nelumbo nucifera HOM05D001653 ORTHO05D001751 2.8e-16 89.0 100 45.0
Nitab4.5_0013721g0010 Nicotiana tabacum HOM05D001653 ORTHO05D001751 2.8e-16 89.0 90 46.7
Solyc11g042460.2 Solanum lycopersicum HOM05D001653 ORTHO05D001751 2.8e-16 89.0 99 45.5
Sopen11g018540 Solanum pennellii HOM05D001653 ORTHO05D001751 2.8e-16 89.0 99 45.5
TWI12G1458 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 2.8e-16 89.0 99 44.4
arahy.Tifrunner.gnm1.ann1.6L045R Arachis hypogaea HOM05D001653 ORTHO05D001751 3.6e-16 88.6 97 46.4
Nitab4.5_0000213g0230 Nicotiana tabacum HOM05D001653 ORTHO05D001751 3.6e-16 88.6 90 46.7
PGR042G2062 Punica granatum HOM05D001653 ORTHO05D001751 3.6e-16 88.6 98 50.0
FAN13G2677 Fragaria x ananassa HOM05D001653 ORTHO05D001751 4.7e-16 88.2 97 48.5
Glyma.07G273300 Glycine max HOM05D001653 ORTHO05D001751 4.7e-16 88.2 102 47.1
QL02p101981 Quercus lobata HOM05D001653 ORTHO05D001751 6.2e-16 87.8 100 50.0
vmacro01696 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 6.2e-16 87.8 101 44.6
vmacro22646 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 6.2e-16 87.8 101 44.6
Atru.chr13.2483 Acer truncatum HOM05D001653 ORTHO05D001751 8.1e-16 87.4 99 46.5
FAN18G2341 Fragaria x ananassa HOM05D001653 ORTHO05D001751 8.1e-16 87.4 97 48.5
Prupe.1G582500 Prunus persica HOM05D001653 ORTHO05D001751 8.1e-16 87.4 100 48.0
Sabra19G0084100 Salix brachista HOM05D001653 ORTHO05D001751 8.1e-16 87.4 96 47.9
Ciclev10000199m.g Citrus clementina HOM05D001653 ORTHO05D001751 1.1e-15 87.0 100 48.0
FvH4_5g39140 Fragaria vesca HOM05D001653 ORTHO05D001751 1.1e-15 87.0 97 48.5
Potri.003G003400 Populus trichocarpa HOM05D001653 ORTHO05D001751 1.1e-15 87.0 101 49.5
PGR142G2904 Punica granatum HOM05D001653 ORTHO05D001751 1.1e-15 87.0 97 46.4
Atru.chr13.2485 Acer truncatum HOM05D001653 ORTHO05D001751 1.4e-15 86.7 99 46.5
Rhsim01G0195500 Rhododendron simsii HOM05D001653 ORTHO05D001751 1.4e-15 86.7 78 50.0
FAN08G1492 Fragaria x ananassa HOM05D001653 ORTHO05D001751 2.3e-15 85.9 97 48.5
Lalb_Chr13g0304461 Lupinus albus HOM05D001653 ORTHO05D001751 2.3e-15 85.9 79 54.4
CSS0009591 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 3.1e-15 85.5 107 48.6
Lsat_1_v5_gn_7_77280 Lactuca sativa HOM05D001653 ORTHO05D001751 3.1e-15 85.5 95 49.5
Potri.019G072800 Populus trichocarpa HOM05D001653 ORTHO05D001751 3.1e-15 85.5 95 46.3
RcHm_v2.0_Chr7g0241141 Rosa chinensis HOM05D001653 ORTHO05D001751 3.1e-15 85.5 97 48.5
THA.LOC104799827 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 4.0e-15 85.1 94 48.9
TWI12G0246 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 4.0e-15 85.1 99 43.4
Hma1.2p1_0157F.1_g069000 Hydrangea macrophylla HOM05D001653 ORTHO05D001751 6.8e-15 84.3 79 50.6
Hma1.2p1_1368F.1_g278550 Hydrangea macrophylla HOM05D001653 ORTHO05D001751 6.8e-15 84.3 79 50.6
ATR1089G086 Amborella trichopoda HOM05D001653 ORTHO05D001751 8.9e-15 84.0 79 54.4
Potri.004G227200 Populus trichocarpa HOM05D001653 ORTHO05D001751 8.9e-15 84.0 101 44.6
Thecc.08G177200 Theobroma cacao HOM05D001653 ORTHO05D001751 8.9e-15 84.0 98 45.9
TWI59G1321 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.2e-14 83.6 100 45.0
MBI03_g28418_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 1.5e-14 83.2 100 46.0
Manes.02G207661 Manihot esculenta HOM05D001653 ORTHO05D001751 1.5e-14 83.2 100 49.0
AUR62040148 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.6e-14 82.4 78 48.7
Sabra19G0084200 Salix brachista HOM05D001653 ORTHO05D001751 2.6e-14 82.4 96 46.9
Sc23g0005030 Simmondsia chinensis HOM05D001653 ORTHO05D001751 2.6e-14 82.4 96 41.7
Aa31LG3G6820 Aethionema arabicum HOM05D001653 ORTHO05D001751 3.4e-14 82.0 97 45.4
EL10Ac6g14027 Beta vulgaris HOM05D001653 ORTHO05D001751 4.4e-14 81.6 78 47.4
AUR62014272 Chenopodium quinoa HOM05D001653 ORTHO05D001751 4.4e-14 81.6 78 47.4
vmacro19844 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 4.4e-14 81.6 78 48.7
Gohir.A13G116100 Gossypium hirsutum HOM05D001653 ORTHO05D001751 9.8e-14 80.5 98 44.9
Manes.10G115000 Manihot esculenta HOM05D001653 ORTHO05D001751 9.8e-14 80.5 78 53.8
PSO017G6671 Papaver somniferum HOM05D001653 ORTHO05D001751 9.8e-14 80.5 88 46.6
Peaxi162Scf00078g00543 Petunia axillaris HOM05D001653 ORTHO05D001751 1.3e-13 80.1 134 36.6
CARHR258820 Cardamine hirsuta HOM05D001653 ORTHO05D001751 1.7e-13 79.7 86 50.0
Lsat_1_v5_gn_7_76900 Lactuca sativa HOM05D001653 ORTHO05D001751 1.7e-13 79.7 96 47.9
CSS0038289 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 2.2e-13 79.3 78 50.0
Sp6g11440 Schrenkiella parvula HOM05D001653 ORTHO05D001751 2.2e-13 79.3 97 45.4
SGA_v2.0_scaffold131G34385 Striga asiatica HOM05D001653 ORTHO05D001751 2.2e-13 79.3 99 41.4
BcaB01g02935 Brassica carinata HOM05D001653 ORTHO05D001751 2.9e-13 79.0 97 47.4
Lsat_1_v5_gn_7_77321 Lactuca sativa HOM05D001653 ORTHO05D001751 2.9e-13 79.0 98 45.9
AL8G23850 Arabidopsis lyrata HOM05D001653 ORTHO05D001751 3.7e-13 78.6 97 46.4
Ca_13536_v3 Cicer arietinum L. HOM05D001653 ORTHO05D001751 3.7e-13 78.6 74 51.4
PSO170G5767 Papaver somniferum HOM05D001653 ORTHO05D001751 3.7e-13 78.6 86 47.7
Peaxi162Scf00011g01631 Petunia axillaris HOM05D001653 ORTHO05D001751 4.9e-13 78.2 91 46.2
Sabra01G0172500 Salix brachista HOM05D001653 ORTHO05D001751 4.9e-13 78.2 79 49.4
A03p27540 Brassica napus HOM05D001653 ORTHO05D001751 6.4e-13 77.8 99 44.4
Migut.B00734 Erythranthe guttata HOM05D001653 ORTHO05D001751 6.4e-13 77.8 101 40.6
Thhalv10012588m.g Eutrema salsugineum HOM05D001653 ORTHO05D001751 6.4e-13 77.8 97 44.3
C03p33250 Brassica napus HOM05D001653 ORTHO05D001751 8.3e-13 77.4 97 45.4
BolC3t15647H Brassica oleracea HOM05D001653 ORTHO05D001751 8.3e-13 77.4 97 45.4
Ciclev10018742m.g Citrus clementina HOM05D001653 ORTHO05D001751 8.3e-13 77.4 95 44.2
BcaC01g04846 Brassica carinata HOM05D001653 ORTHO05D001751 1.1e-12 77.0 97 46.4
CANSAT25G0427 Cannabis sativa HOM05D001653 ORTHO05D001751 1.1e-12 77.0 100 41.0
CsaV3_5G039980 Cucumis sativus L. HOM05D001653 ORTHO05D001751 1.1e-12 77.0 85 42.4
DCAR_029164 Daucus carota HOM05D001653 ORTHO05D001751 1.1e-12 77.0 93 41.9
THA.LOC104806753 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 1.1e-12 77.0 80 50.0
AT5G49900 Arabidopsis thaliana HOM05D001653 ORTHO05D001751 1.4e-12 76.6 97 45.4
Aqoxy5G00840 Aquilegia oxysepala HOM05D001653 ORTHO05D001751 1.9e-12 76.3 99 41.4
ECA236G1434 Erigeron canadensis HOM05D001653 ORTHO05D001751 1.9e-12 76.3 96 46.9
Carub.0008s0976 Capsella rubella HOM05D001653 ORTHO05D001751 2.4e-12 75.9 97 44.3
BraA03t11967Z Brassica rapa HOM05D001653 ORTHO05D001751 3.2e-12 75.5 97 45.4
Gorai.013G133800 Gossypium raimondii HOM05D001653 ORTHO05D001751 3.2e-12 75.5 98 43.9
COL.COLO4_24884 Corchorus olitorius HOM05D001653 ORTHO05D001751 7.1e-12 74.3 95 43.2
DCAR_006658 Daucus carota HOM05D001653 ORTHO05D001751 7.1e-12 74.3 92 39.1
BcaB07g32997 Brassica carinata HOM05D001653 ORTHO05D001751 9.2e-12 73.9 80 47.5
Carub.0001s3187 Capsella rubella HOM05D001653 ORTHO05D001751 9.2e-12 73.9 85 44.7
Thhalv10006714m.g Eutrema salsugineum HOM05D001653 ORTHO05D001751 1.2e-11 73.6 94 40.4
Gohir.D13G119400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 1.2e-11 73.6 98 42.9
BcaC08g43846 Brassica carinata HOM05D001653 ORTHO05D001751 2.1e-11 72.8 94 41.5
C06p12280 Brassica napus HOM05D001653 ORTHO05D001751 2.1e-11 72.8 94 41.5
BolC6t36379H Brassica oleracea HOM05D001653 ORTHO05D001751 2.1e-11 72.8 94 41.5
BraA09t38809Z Brassica rapa HOM05D001653 ORTHO05D001751 2.1e-11 72.8 94 41.5
Sp1g29070 Schrenkiella parvula HOM05D001653 ORTHO05D001751 2.1e-11 72.8 80 46.2
ClCG08G001040 Citrullus lanatus HOM05D001653 ORTHO05D001751 2.7e-11 72.4 125 31.2
Phvul.003G075400 Phaseolus vulgaris HOM05D001653 ORTHO05D001751 2.7e-11 72.4 83 47.0
HPP92_004502 Vanilla planifolia HOM05D001653 ORTHO05D001751 2.7e-11 72.4 81 50.6
HPP92_004536 Vanilla planifolia HOM05D001653 ORTHO05D001751 2.7e-11 72.4 108 42.6
CAN.G855.32 Capsicum annuum HOM05D001653 ORTHO05D001751 3.5e-11 72.0 80 48.8
AL1G48100 Arabidopsis lyrata HOM05D001653 ORTHO05D001751 4.6e-11 71.6 80 45.0
Aa31LG6G8010 Aethionema arabicum HOM05D001653 ORTHO05D001751 7.8e-11 70.9 80 46.2
AT1G33700 Arabidopsis thaliana HOM05D001653 ORTHO05D001751 1.0e-10 70.5 74 44.6
HanXRQChr11g0329671 Helianthus annuus HOM05D001653 ORTHO05D001751 2.3e-10 69.3 95 41.1
CARHR033110 Cardamine hirsuta HOM05D001653 ORTHO05D001751 3.0e-10 68.9 70 47.1
Solyc01g103230.3 Solanum lycopersicum HOM05D001653 ORTHO05D001751 3.0e-10 68.9 97 43.3
Sopen01g045650 Solanum pennellii HOM05D001653 ORTHO05D001751 5.1e-10 68.2 79 46.8
Cc02_g23410 Coffea canephora HOM05D001653 ORTHO05D001751 6.6e-10 67.8 92 38.0
Nitab4.5_0002546g0070 Nicotiana tabacum HOM05D001653 ORTHO05D001751 6.6e-10 67.8 90 42.2
PGSC0003DMG401024877 Solanum tuberosum HOM05D001653 ORTHO05D001751 6.6e-10 67.8 79 45.6
ClCG11G000490 Citrullus lanatus HOM05D001653 ORTHO05D001751 2.5e-09 65.9 106 37.7
PSO210G6174 Papaver somniferum HOM05D001653 ORTHO05D001751 2.5e-09 65.9 98 35.7
CsaV3_5G014080 Cucumis sativus L. HOM05D001653 ORTHO05D001751 5.6e-09 64.7 102 33.3
Sed0024587 Sechium edule HOM05D001653 ORTHO05D001751 2.1e-08 62.8 105 35.2
CiPaw.05G002600 Carya illinoinensis HOM05D001653 ORTHO05D001751 2.8e-08 62.4 82 46.3
Haze_13949 Corylus avellana HOM05D001653 ORTHO05D001751 4.7e-08 61.6 55 56.4
Nitab4.5_0001057g0190 Nicotiana tabacum HOM05D001653 ORTHO05D001751 8.1e-08 60.8 71 43.7
MELO3C026480.2 Cucumis melo HOM05D001653 ORTHO05D001751 1.4e-07 60.1 105 33.3
PGR142G1266 Punica granatum HOM05D001653 ORTHO05D001751 2.3e-07 59.3 66 42.4
Dinv16113 Davidia involucrata HOM05D001653 ORTHO05D001751 6.8e-07 57.8 46 56.5
Os11g0242100 Oryza sativa ssp. japonica HOM05D001653 ORTHO05D001751 2.6e-06 55.8 104 35.6


User provided reference genes

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