Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 7.6e-58 226.9 108 100.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.6e-50 201.8 108 87.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.9e-49 197.6 103 86.4
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 6.4e-49 197.2 106 84.9
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.4e-48 196.1 106 84.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-47 193.0 106 83.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.6e-47 192.6 105 82.9
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.7e-47 191.8 106 83.0
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 3.5e-47 191.4 104 82.7
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 4.6e-47 191.0 106 81.1
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 4.6e-47 191.0 106 82.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 6.0e-47 190.7 106 82.1
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 7.9e-47 190.3 106 83.0
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.0e-46 189.9 106 81.1
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.0e-46 189.9 108 80.6
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.3e-46 189.5 103 81.6
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 2.3e-46 188.7 104 82.7
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.3e-46 188.7 106 80.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.0e-46 188.3 106 79.2
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 3.0e-46 188.3 108 79.6
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 80.2
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 6.7e-46 187.2 106 81.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 6.7e-46 187.2 108 79.6
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.5e-45 186.0 103 80.6
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.9e-45 185.7 103 81.6
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.9e-45 185.7 103 81.6
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.9e-45 185.7 108 79.6
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.5e-45 185.3 102 81.4
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.3e-45 184.9 106 80.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.3e-45 184.9 104 80.8
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.3e-45 184.9 103 81.6
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.3e-45 184.9 103 81.6
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 3.3e-45 184.9 106 80.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.3e-45 184.5 102 81.4
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 4.3e-45 184.5 106 79.2
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 4.3e-45 184.5 106 79.2
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 4.3e-45 184.5 108 79.6
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.3e-45 184.5 105 79.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 5.6e-45 184.1 106 78.3
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 5.6e-45 184.1 102 81.4
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.6e-45 184.1 106 79.2
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.6e-45 184.1 106 78.3
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.4e-45 183.7 106 77.4
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 7.4e-45 183.7 107 78.5
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 7.4e-45 183.7 106 79.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 9.6e-45 183.3 104 80.8
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 9.6e-45 183.3 108 77.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 9.6e-45 183.3 104 80.8
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 9.6e-45 183.3 106 79.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.6e-44 182.6 106 80.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.6e-44 182.6 106 80.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.6e-44 182.6 106 80.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 1.6e-44 182.6 104 79.8
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 2.1e-44 182.2 106 77.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.1e-44 182.2 103 80.6
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.8e-44 181.8 98 84.7
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 3.7e-44 181.4 106 78.3
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.7e-44 181.4 106 79.2
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.7e-44 181.4 106 79.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 3.7e-44 181.4 104 79.8
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 77.6
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 6.2e-44 180.6 108 76.9
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 80.8
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 8.2e-44 180.3 106 78.3
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 8.2e-44 180.3 106 78.3
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 8.2e-44 180.3 106 78.3
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.1e-43 179.9 98 83.7
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 78.3
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 76.6
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 77.9
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.8e-43 179.1 106 78.3
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.4e-43 178.7 106 77.4
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.4e-43 178.7 106 77.4
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.4e-43 178.7 106 75.5
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 77.9
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 77.4
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 76.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 76.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 77.4
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 75.7
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.0e-43 177.9 106 76.4
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 4.0e-43 177.9 106 78.3
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 5.3e-43 177.6 103 78.6
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.3e-43 177.6 104 76.9
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 5.3e-43 177.6 104 77.9
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 6.9e-43 177.2 106 76.4
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.9e-43 177.2 98 80.6
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 6.9e-43 177.2 106 74.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.9e-43 177.2 170 56.5
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 9.0e-43 176.8 104 76.9
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 9.0e-43 176.8 97 81.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 9.0e-43 176.8 106 77.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 9.0e-43 176.8 107 76.6
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.2e-42 176.4 106 76.4
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.2e-42 176.4 99 78.8
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.2e-42 176.4 106 72.6
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.5e-42 176.0 106 76.4
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.0e-42 175.6 102 75.5
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 77.9
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.0e-42 175.6 106 75.5
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.6e-42 175.3 107 75.7
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 77.1
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 73.3
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 7.6e-42 173.7 106 75.5
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.0e-41 173.3 104 76.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 106 73.6
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.3e-41 172.9 106 73.6
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 71.4
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 101 78.2
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.7e-41 172.6 106 73.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.9e-41 171.8 104 74.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 2.9e-41 171.8 101 77.2
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.8e-41 171.4 101 78.2
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.8e-41 171.4 101 78.2
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 3.8e-41 171.4 106 70.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 6.5e-41 170.6 106 72.6
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 73.1
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.1e-40 169.9 106 72.6
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 106 71.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.4e-40 169.5 106 73.6
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.4e-40 169.5 111 70.3
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-40 169.1 106 72.6
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.9e-40 169.1 87 85.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 71.2
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 71.2
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 3.2e-40 168.3 89 83.1
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 3.2e-40 168.3 106 69.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.2e-40 168.3 106 71.7
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 4.2e-40 167.9 106 71.7
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 4.2e-40 167.9 106 71.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.2e-40 167.9 106 70.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.2e-40 167.9 106 71.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 5.5e-40 167.5 98 75.5
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 7.1e-40 167.2 106 67.0
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-39 166.4 106 70.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.2e-39 166.4 106 69.8
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 2.7e-39 165.2 106 69.8
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 8.7e-38 160.2 106 66.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.6e-34 148.7 78 82.1
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.6e-34 148.7 106 64.2
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 2.2e-33 145.6 106 62.3
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.2e-33 145.6 105 64.8
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 5.0e-33 144.4 84 79.8
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.9e-32 142.5 72 84.7
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.2e-32 141.4 97 63.9
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.1e-31 139.0 107 61.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.0e-30 136.7 103 63.1
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.1e-30 134.4 79 77.2
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 4.3e-29 131.3 81 72.8
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 6.3e-28 127.5 95 56.8
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-24 116.7 72 75.0
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 6.7e-22 107.5 66 74.2
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.5e-21 106.3 71 69.0
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.6e-21 105.5 68 73.5
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 7.4e-21 104.0 62 77.4
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 1.4e-19 99.8 59 76.3
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.4e-19 99.0 92 45.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 4.1e-19 98.2 59 78.0
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 9.1e-19 97.1 62 72.6
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.2e-18 96.7 54 79.6
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 7.7e-18 94.0 62 72.6
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.9e-16 89.4 54 72.2
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.5e-16 89.0 50 82.0
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.2e-16 88.2 54 70.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.6e-15 86.3 92 41.3
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.6e-15 85.1 55 65.5
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 8.0e-15 84.0 45 77.8
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 3.7e-12 75.1 64 57.8
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.1e-11 73.6 45 71.1


User provided reference genes

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