Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.1e-63 244.2 120 100.0
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.4e-57 226.1 120 94.2
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.7e-55 217.2 113 92.9
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.1e-52 208.0 110 93.6
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.5e-51 204.5 109 93.6
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.5e-50 200.7 109 89.0
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 7.2e-41 170.6 110 76.4
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 5.3e-36 154.5 114 66.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 5.3e-36 154.5 121 62.0
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 7.0e-36 154.1 111 67.6
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.5e-35 152.9 119 62.2
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.5e-35 151.8 120 65.0
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 1.9e-33 146.0 120 60.0
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.9e-33 146.0 121 64.5
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 1.2e-32 143.3 116 62.1
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 1.0e-31 140.2 123 58.5
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 1.0e-31 140.2 120 58.3
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 1.0e-31 140.2 112 62.5
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.0e-31 140.2 120 58.3
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.8e-31 139.4 116 58.6
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.8e-31 139.4 116 58.6
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.8e-31 139.4 120 58.3
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 2.3e-31 139.0 116 59.5
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 3.0e-31 138.7 119 56.3
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 3.9e-31 138.3 111 60.4
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 3.9e-31 138.3 113 60.2
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 3.9e-31 138.3 115 61.7
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 5.2e-31 137.9 116 57.8
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 5.2e-31 137.9 112 59.8
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 6.7e-31 137.5 116 57.8
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 6.7e-31 137.5 116 57.8
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 6.7e-31 137.5 114 59.6
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 8.8e-31 137.1 115 61.7
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.1e-30 136.7 112 60.7
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.0e-30 136.0 121 58.7
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.0e-30 136.0 112 58.0
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 2.0e-30 136.0 115 60.9
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.6e-30 135.6 112 59.8
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 2.6e-30 135.6 109 64.2
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 3.3e-30 135.2 123 57.7
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 3.3e-30 135.2 116 58.6
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 5.7e-30 134.4 112 59.8
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 5.7e-30 134.4 113 60.2
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.3e-29 133.3 112 58.9
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.3e-29 133.3 120 56.7
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 1.3e-29 133.3 119 58.8
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.7e-29 132.9 116 56.0
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 2.2e-29 132.5 123 56.9
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 3.7e-29 131.7 116 56.0
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 6.3e-29 131.0 121 56.2
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 6.3e-29 131.0 114 60.5
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 6.3e-29 131.0 116 56.9
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.3e-29 131.0 116 56.9
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.3e-29 131.0 116 56.9
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 6.3e-29 131.0 116 56.9
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 8.2e-29 130.6 116 57.8
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.1e-28 130.2 116 58.6
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.8e-28 129.4 118 54.2
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 1.8e-28 129.4 115 55.7
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 1.8e-28 129.4 114 57.9
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 1.8e-28 129.4 116 57.8
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.1e-28 128.6 116 56.0
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.1e-28 128.6 116 56.0
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.1e-28 128.6 116 57.8
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.1e-28 128.6 116 57.8
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 9.1e-28 127.1 120 50.0
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 9.1e-28 127.1 120 50.0
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-27 126.7 116 55.2
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 2.6e-27 125.6 116 54.3
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 3.5e-27 125.2 111 53.2
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 4.5e-27 124.8 114 53.5
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 5.9e-27 124.4 121 54.5
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 1.0e-26 123.6 115 54.8
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 1.0e-26 123.6 116 54.3
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 1.0e-26 123.6 117 55.6
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.0e-26 123.6 116 50.9
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 1.0e-26 123.6 120 54.2
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 1.7e-26 122.9 109 56.9
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 2.2e-26 122.5 111 56.8
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 2.9e-26 122.1 111 54.1
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 6.5e-26 120.9 84 67.9
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 8.5e-26 120.6 114 52.6
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 8.5e-26 120.6 98 60.2
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.1e-25 120.2 114 54.4
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.5e-25 119.8 112 56.2
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 1.9e-25 119.4 112 57.1
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 2.5e-25 119.0 112 52.7
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.5e-25 119.0 112 52.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 3.2e-25 118.6 112 56.2
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 3.2e-25 118.6 113 52.2
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 5.5e-25 117.9 112 53.6
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 7.2e-25 117.5 114 53.5
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 9.4e-25 117.1 110 55.5
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.2e-24 116.7 109 54.1
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.2e-24 116.7 120 49.2
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 2.7e-24 115.5 114 49.1
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 3.6e-24 115.2 112 54.5
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 3.6e-24 115.2 112 54.5
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 6.1e-24 114.4 109 53.2
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 1.8e-23 112.8 114 51.8
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.8e-23 112.8 113 51.3
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 6.7e-23 110.9 111 50.5
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 3.3e-22 108.6 112 50.9
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 1.3e-21 106.7 112 50.9
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.2e-21 105.9 111 50.5
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.2e-21 105.9 111 52.3
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 2.8e-21 105.5 115 49.6
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 6.3e-21 104.4 112 48.2
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 6.3e-21 104.4 123 47.2
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 2.4e-20 102.4 109 50.5
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.4e-20 102.4 115 48.7
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 2.7e-19 99.0 115 43.5
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 3.5e-19 98.6 106 50.0
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 4.5e-19 98.2 125 45.6
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.6e-16 89.7 114 48.2
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.0e-15 87.0 111 45.9
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.4e-14 81.6 81 56.8
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 5.7e-14 81.3 85 54.1
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 4.8e-13 78.2 113 45.1
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.1e-12 75.1 48 72.9
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.2e-11 73.6 119 33.6
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.6e-11 73.2 115 34.8
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 7.7e-11 70.9 91 42.9
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.3e-10 70.1 81 50.6
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.9e-09 66.2 81 48.1
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.5e-06 56.6 51 51.0


User provided reference genes

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