Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.0e-115 419.1 210 100.0
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.5e-113 412.1 207 99.0
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 4.1e-100 368.2 193 95.9
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.6e-99 366.3 189 96.8
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.0e-98 363.6 189 95.8
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.3e-98 363.2 189 96.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 1.3e-98 363.2 189 96.3
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.3e-98 363.2 189 95.8
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.3e-98 363.2 189 96.3
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.7e-98 362.8 189 96.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.7e-98 362.8 188 96.8
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.7e-98 362.8 189 96.3
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.9e-98 362.1 189 96.3
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 3.8e-98 361.7 189 95.8
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 5.0e-98 361.3 187 96.8
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 5.0e-98 361.3 189 95.8
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 5.0e-98 361.3 189 95.8
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 6.6e-98 360.9 189 95.2
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 8.6e-98 360.5 189 94.7
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 1.1e-97 360.1 189 95.2
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.5e-97 359.8 189 94.7
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.9e-97 359.4 199 91.5
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.9e-97 359.4 189 94.7
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.9e-97 359.4 189 95.2
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 2.5e-97 359.0 189 94.2
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.5e-97 359.0 189 94.7
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 3.3e-97 358.6 189 94.7
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 3.3e-97 358.6 189 94.7
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 3.3e-97 358.6 189 94.7
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 3.3e-97 358.6 204 88.7
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 4.2e-97 358.2 189 93.7
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 4.2e-97 358.2 187 95.2
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 4.2e-97 358.2 189 94.7
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 5.5e-97 357.8 189 94.7
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 5.5e-97 357.8 184 97.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.5e-97 357.8 189 93.7
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 5.5e-97 357.8 189 94.7
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 7.2e-97 357.5 189 94.2
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 7.2e-97 357.5 189 94.2
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 7.2e-97 357.5 184 97.3
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 9.5e-97 357.1 189 93.7
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 9.5e-97 357.1 189 94.7
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 9.5e-97 357.1 189 94.2
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 9.5e-97 357.1 189 94.2
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.2e-96 356.7 189 94.2
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 1.2e-96 356.7 189 94.2
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.2e-96 356.7 189 94.2
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.6e-96 356.3 189 93.7
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 2.1e-96 355.9 184 96.7
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.1e-96 355.9 189 94.2
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 2.1e-96 355.9 189 94.2
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 2.8e-96 355.5 189 94.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 3.6e-96 355.1 189 93.7
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 3.6e-96 355.1 193 93.3
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 4.7e-96 354.8 189 93.7
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.7e-96 354.8 184 96.7
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 4.7e-96 354.8 187 93.6
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 6.1e-96 354.4 189 93.1
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 6.1e-96 354.4 189 93.1
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 6.1e-96 354.4 186 95.2
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 6.1e-96 354.4 189 93.1
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 8.0e-96 354.0 189 93.1
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.0e-95 353.6 189 92.6
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.0e-95 353.6 189 91.5
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.0e-95 353.6 189 92.6
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.0e-95 353.6 189 92.6
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 92.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 1.4e-95 353.2 186 94.6
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 92.6
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 92.6
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 93.7
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 93.1
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 93.1
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 1.4e-95 353.2 189 93.1
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 1.8e-95 352.8 189 93.1
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 1.8e-95 352.8 189 92.6
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.8e-95 352.8 189 92.1
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 2.3e-95 352.4 189 93.1
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.3e-95 352.4 189 92.1
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 2.3e-95 352.4 184 95.1
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 3.0e-95 352.1 184 95.1
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 3.0e-95 352.1 184 95.1
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 3.0e-95 352.1 184 95.1
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.0e-95 352.1 189 92.6
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 4.0e-95 351.7 186 94.6
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 4.0e-95 351.7 189 92.1
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 4.0e-95 351.7 189 92.1
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.8e-95 350.9 189 91.5
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.8e-95 350.9 189 92.6
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.8e-95 350.9 189 92.6
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 8.9e-95 350.5 184 95.1
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 8.9e-95 350.5 184 95.1
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 8.9e-95 350.5 189 91.0
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 1.5e-94 349.7 189 92.1
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 2.0e-94 349.4 189 91.0
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 2.0e-94 349.4 186 93.5
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.4e-94 348.6 189 91.5
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 3.4e-94 348.6 186 92.5
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.3e-93 346.7 189 91.5
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.2e-93 345.9 190 91.1
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.2e-93 345.9 189 91.0
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 4.9e-93 344.7 194 91.2
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.8e-92 342.8 183 92.9
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 4.1e-92 341.7 189 88.9
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 7.8e-91 337.4 212 82.5
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.7e-90 336.3 214 81.3
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 2.1e-88 329.3 189 85.2
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 6.1e-88 327.8 220 77.7
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 8.0e-88 327.4 189 87.8
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 3.1e-87 325.5 189 85.2
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 3.4e-86 322.0 189 86.2
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 5.4e-84 314.7 190 79.5
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 2.7e-83 312.4 170 91.2
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 6.0e-83 311.2 189 84.1
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 6.6e-82 307.8 189 77.8
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 3.4e-78 295.4 187 83.4
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.9e-77 292.4 189 81.0
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.9e-77 291.6 189 81.0
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.4e-77 291.2 186 82.3
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.4e-77 291.2 186 82.3
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 6.4e-77 291.2 189 80.4
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 2.4e-76 289.3 150 98.0
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.1e-76 288.5 186 81.7
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 2.7e-75 285.8 189 79.4
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 3.5e-75 285.4 166 86.7
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 6.8e-71 271.2 190 73.2
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.1e-67 259.6 134 95.5
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 4.2e-60 235.3 124 95.2
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.6e-59 233.4 137 82.5
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.0e-59 231.5 178 70.2
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 5.1e-58 228.4 176 63.1
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 3.1e-55 219.2 148 78.4
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.6e-54 214.5 123 87.8
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.7e-51 206.1 122 86.9
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 4.8e-48 195.3 185 61.6
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 7.6e-46 188.0 184 51.6
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.7e-40 169.1 87 95.4
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 3.7e-40 169.1 167 52.7
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 8.1e-40 167.9 83 98.8
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.0e-39 165.6 134 68.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.3e-36 154.5 75 100.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.7e-35 152.9 75 98.7
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.0e-30 136.7 73 91.8
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.3e-28 127.9 70 91.4
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.1e-27 126.7 70 90.0
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 6.5e-21 105.1 54 96.3
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 6.5e-21 105.1 57 87.7
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.6e-19 99.4 109 55.0
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.3e-18 96.7 109 53.2
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.8e-15 87.0 47 87.2
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.2e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.5e-14 84.0 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 4.5e-14 82.4 52 73.1
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 1.0e-13 81.3 90 53.3
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 2.5e-12 76.6 41 92.7
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.2e-12 76.3 57 68.4
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 1.2e-11 74.3 46 82.6
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 1.0e-10 71.2 42 83.3
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 1.0e-10 71.2 42 83.3
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 9.1e-07 58.2 39 74.4


User provided reference genes

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