Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 9.8e-217 756.5 386 100.0
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 7.9e-166 587.4 389 78.7
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.3e-162 574.7 401 77.1
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.3e-162 574.7 401 77.3
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.2e-160 569.3 388 78.1
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.6e-156 555.8 377 76.9
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.4e-153 545.4 382 74.1
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.5e-151 539.3 386 74.9
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 4.7e-150 535.0 379 74.4
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.3e-147 524.6 383 72.6
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 5.3e-146 521.5 388 70.9
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.9e-144 515.8 400 70.8
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 1.1e-143 513.8 388 69.8
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 5.5e-143 511.5 389 70.2
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.5e-140 503.4 387 69.8
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.4e-140 501.9 389 70.7
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 5.7e-140 501.5 399 68.9
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 7.5e-140 501.1 399 68.9
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.7e-139 500.0 389 71.5
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.7e-139 500.0 389 70.7
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 2.2e-139 499.6 391 69.3
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 4.8e-139 498.4 399 68.7
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 2.0e-137 493.0 381 68.2
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.0e-137 493.0 385 70.9
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.0e-137 493.0 396 69.4
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.3e-136 490.3 385 70.1
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 3.8e-136 488.8 382 68.1
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 6.5e-136 488.0 383 68.9
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 6.5e-136 488.0 381 69.0
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.9e-135 486.5 388 68.8
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 3.2e-135 485.7 382 69.1
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 3.2e-135 485.7 392 69.4
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.2e-134 483.8 388 68.6
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.7e-134 482.6 382 69.9
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 6.1e-134 481.5 382 67.8
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 1.4e-133 480.3 399 66.4
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 1.2e-132 477.2 381 67.5
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 2.6e-132 476.1 387 68.0
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.4e-130 470.3 387 66.7
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 1.8e-130 469.9 389 66.6
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.1e-130 469.2 387 65.4
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 3.1e-130 469.2 383 66.6
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 2.0e-129 466.5 387 66.7
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 4.5e-129 465.3 384 65.9
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 7.7e-129 464.5 386 66.1
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.7e-128 463.4 381 64.6
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.1e-127 460.7 372 66.4
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 3.2e-127 459.1 384 64.6
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 1.6e-126 456.8 391 64.2
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 2.8e-126 456.1 393 65.1
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.0e-125 454.1 385 64.2
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.4e-125 453.8 393 64.4
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 8.9e-125 451.1 393 64.6
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.2e-124 450.7 386 64.2
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.5e-124 450.3 380 65.0
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.6e-124 449.5 379 64.9
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 3.4e-124 449.1 383 65.0
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.7e-123 446.8 348 69.0
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 2.2e-123 446.4 381 65.6
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.8e-123 446.0 380 65.8
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 8.3e-123 444.5 382 63.6
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.1e-122 442.6 380 63.7
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.1e-122 442.2 396 62.1
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 5.4e-122 441.8 380 63.4
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 7.0e-122 441.4 378 63.8
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 7.0e-122 441.4 382 64.9
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 2.0e-121 439.9 398 61.1
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 3.5e-121 439.1 392 62.2
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 5.9e-121 438.3 387 63.6
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 2.9e-120 436.0 359 69.1
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 2.9e-120 436.0 359 69.1
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 8.6e-120 434.5 352 67.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.9e-119 433.3 395 62.0
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 5.6e-119 431.8 395 61.8
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 2.1e-118 429.9 381 61.7
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 4.4e-116 422.2 386 61.1
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 5.7e-116 421.8 386 61.1
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 1.3e-112 410.6 391 57.8
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 3.3e-111 406.0 388 62.9
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.2e-110 404.1 358 62.6
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 1.2e-110 404.1 385 57.4
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 5.2e-109 398.7 384 60.2
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.5e-108 397.1 385 61.0
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 4.4e-108 395.6 394 58.1
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 7.5e-108 394.8 385 61.0
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 9.8e-108 394.4 385 60.3
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.3e-107 394.0 384 58.9
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.3e-107 394.0 381 59.8
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.3e-107 394.0 385 60.8
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 1.3e-107 394.0 383 58.0
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 2.2e-107 393.3 384 59.1
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 2.2e-107 393.3 385 60.0
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 4.9e-107 392.1 385 60.0
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 6.4e-107 391.7 384 59.4
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.1e-106 389.0 381 58.3
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 5.4e-106 388.7 384 59.4
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 5.4e-106 388.7 382 57.6
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 9.2e-106 387.9 384 59.4
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 9.2e-106 387.9 384 57.6
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 2.0e-105 386.7 381 59.8
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.3e-104 384.0 384 59.4
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 6.6e-104 381.7 387 60.2
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 1.1e-103 380.9 388 57.7
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.9e-103 380.2 381 57.2
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 5.6e-103 378.6 288 70.8
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 3.6e-102 375.9 382 55.8
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.8e-101 373.6 401 54.4
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 3.7e-99 365.9 378 55.8
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 2.5e-95 353.2 368 54.3
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 4.9e-91 339.0 389 50.6
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.1e-90 335.1 332 56.3
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 8.7e-88 328.2 300 63.0
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.8e-85 320.5 380 48.2
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 9.0e-85 318.2 293 61.4
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 2.0e-84 317.0 400 48.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.5e-79 300.8 331 52.6
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.8e-78 296.6 170 87.1
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.9e-73 278.5 260 56.5
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 9.0e-69 265.0 451 39.5
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.9e-64 249.6 300 51.7
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 8.7e-64 248.4 300 51.3
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.5e-55 220.3 196 64.3
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 3.1e-53 213.4 230 54.3
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.9e-51 206.8 215 58.1
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 5.0e-51 206.1 371 41.2
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 4.2e-42 176.4 146 70.5
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.5e-39 167.9 281 38.4
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.4e-37 161.4 127 59.8
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 2.7e-33 147.1 169 56.2
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 3.9e-32 143.3 296 33.8
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 8.8e-32 142.1 181 49.7
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 8.2e-30 135.6 82 78.0
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.8e-24 117.9 85 68.2
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.0e-23 114.4 119 51.3
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 5.7e-15 86.3 88 51.1
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 5.4e-13 79.7 57 66.7
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.1e-10 72.0 248 26.6
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 2.5e-10 70.9 51 74.5
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 7.2e-10 69.3 53 58.5
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.6e-09 68.2 81 51.9
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.1e-09 67.8 71 56.3
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 3.6e-09 67.0 253 23.3
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 5.2e-08 63.2 216 27.3
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.8e-06 57.4 168 26.2
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 4.9e-06 56.6 97 40.2


User provided reference genes

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