Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 4.8e-134 481.1 233 100.0
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.9e-100 367.9 218 77.5
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.6e-92 343.2 219 71.7
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.6e-92 343.2 218 70.6
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.3e-91 340.1 215 70.7
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 1.3e-91 340.1 219 70.8
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 2.3e-91 339.3 224 68.8
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 3.9e-91 338.6 223 68.2
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 5.0e-91 338.2 219 71.7
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 6.6e-91 337.8 215 70.2
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 6.6e-91 337.8 219 71.7
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.5e-90 336.7 224 70.1
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 1.5e-90 336.7 215 72.1
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 1.9e-90 336.3 222 70.3
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 3.3e-90 335.5 226 68.6
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 5.6e-90 334.7 227 69.6
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 9.5e-90 334.0 215 70.2
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 1.2e-89 333.6 219 70.3
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 6.2e-89 331.3 222 68.9
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 1.1e-88 330.5 224 70.1
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 2.3e-88 329.3 221 70.1
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 2.0e-87 326.2 215 68.4
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 4.4e-87 325.1 222 68.9
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 1.7e-86 323.2 217 71.9
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.7e-86 323.2 210 69.5
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 4.9e-86 321.6 219 68.5
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 8.3e-86 320.9 220 68.6
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 1.4e-85 320.1 219 68.9
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 1.4e-85 320.1 224 66.5
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 3.2e-85 318.9 229 66.4
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 5.4e-85 318.2 219 64.4
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 7.1e-85 317.8 220 66.4
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 1.6e-84 316.6 218 67.4
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 2.1e-84 316.2 216 67.1
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 2.1e-84 316.2 225 64.0
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 3.5e-84 315.5 225 66.2
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 4.6e-84 315.1 216 67.6
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 6.0e-84 314.7 220 65.5
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 6.0e-84 314.7 220 65.5
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 7.8e-84 314.3 219 67.6
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 1.3e-83 313.5 220 64.5
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 1.7e-83 313.2 226 65.5
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 1.1e-82 310.5 224 65.2
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.1e-82 310.5 216 67.1
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.5e-82 310.1 210 66.2
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 1.5e-82 310.1 225 62.2
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 1.9e-82 309.7 215 65.6
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 2.5e-82 309.3 217 65.4
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 2.5e-82 309.3 215 65.1
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 7.3e-82 307.8 223 64.6
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 9.5e-82 307.4 218 64.2
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 9.5e-82 307.4 224 65.2
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 1.2e-81 307.0 180 78.9
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 2.1e-81 306.2 221 62.9
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 2.1e-81 306.2 225 65.3
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 2.8e-81 305.8 217 64.5
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 3.6e-81 305.4 200 72.5
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 4.7e-81 305.1 224 62.5
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 8.1e-81 304.3 228 64.5
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 8.1e-81 304.3 222 64.9
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 1.1e-80 303.9 214 67.3
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 1.8e-80 303.1 277 54.5
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 2.3e-80 302.8 214 66.4
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 1.2e-79 300.4 213 66.2
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 4.4e-79 298.5 221 64.3
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 2.2e-78 296.2 211 63.0
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 8.4e-78 294.3 216 64.8
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 1.4e-77 293.5 219 60.7
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 4.1e-77 292.0 216 63.0
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 7.1e-77 291.2 219 60.3
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 9.2e-77 290.8 215 62.3
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 3.5e-76 288.9 223 60.5
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 2.3e-75 286.2 219 60.7
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 2.3e-75 286.2 213 62.9
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 3.9e-75 285.4 215 60.9
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 3.9e-75 285.4 219 59.4
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 5.1e-75 285.0 219 60.3
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 8.6e-75 284.3 224 57.6
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 8.6e-75 284.3 219 59.8
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 8.6e-75 284.3 219 59.8
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 8.6e-75 284.3 219 59.8
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 1.1e-74 283.9 219 60.3
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.5e-74 283.5 177 71.8
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 3.3e-74 282.3 223 60.1
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 8.1e-73 277.7 213 61.5
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 8.1e-73 277.7 226 58.0
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.8e-72 276.6 202 65.8
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 1.5e-71 273.5 209 61.2
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 3.4e-71 272.3 213 59.2
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 1.7e-70 270.0 212 57.1
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 2.2e-70 269.6 213 58.7
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 3.5e-68 262.3 219 56.6
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 6.0e-68 261.5 156 78.2
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 1.0e-67 260.8 212 57.5
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 1.3e-67 260.4 212 57.5
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 5.1e-67 258.5 213 57.7
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 6.2e-65 251.5 246 49.2
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 9.0e-64 247.7 176 64.2
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 9.9e-63 244.2 179 65.9
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 2.2e-62 243.0 217 54.8
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 2.9e-62 242.7 175 63.4
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 1.9e-61 240.0 213 56.3
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 2.7e-60 236.1 223 52.5
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 5.1e-59 231.9 221 51.1
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 4.8e-57 225.3 216 53.2
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.8e-56 223.4 207 52.2
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 1.7e-54 216.9 173 55.5
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 4.6e-52 208.8 160 63.1
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 1.3e-51 207.2 224 43.3
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 1.9e-50 203.4 213 45.5
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 5.6e-50 201.8 157 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 2.0e-47 193.4 211 44.5
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 4.5e-47 192.2 208 46.2
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 1.1e-45 187.6 138 60.1
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 1.9e-45 186.8 163 55.2
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 4.2e-45 185.7 113 75.2
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 3.7e-41 172.6 164 54.3
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 7.9e-28 128.3 107 58.9
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 5.1e-27 125.6 220 31.4
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 7.4e-26 121.7 79 69.6
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 5.3e-24 115.5 99 55.6
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 2.6e-18 96.7 220 30.5
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 1.7e-14 84.0 56 67.9
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.4e-11 74.3 61 55.7
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 5.2e-11 72.4 43 67.4
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 4.8e-09 65.9 82 43.9
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 3.8e-06 56.2 64 42.2


User provided reference genes

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