Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012016 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 9.5e-29 129.4 62 100.0
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.3e-13 76.6 43 83.7
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 7.3e-13 76.6 43 83.7
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 7.3e-13 76.6 43 83.7
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 7.3e-13 76.6 43 83.7
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 7.3e-13 76.6 43 83.7
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 9.5e-13 76.3 44 79.5
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.2e-12 75.9 43 83.7
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.2e-12 75.9 43 83.7
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.2e-12 75.9 43 83.7
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 1.2e-12 75.9 51 70.6
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.6e-12 75.5 43 81.4
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 2.1e-12 75.1 43 81.4
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 2.8e-12 74.7 43 81.4
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 3.6e-12 74.3 43 79.1
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 3.6e-12 74.3 48 75.0
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 3.6e-12 74.3 47 74.5
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.7e-12 73.9 43 76.7
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.7e-12 73.9 43 76.7
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 4.7e-12 73.9 43 76.7
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 6.2e-12 73.6 48 70.8
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 6.2e-12 73.6 44 75.0
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 6.2e-12 73.6 53 64.2
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 6.2e-12 73.6 51 66.7
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 6.2e-12 73.6 43 79.1
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 6.2e-12 73.6 42 81.0
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 8.1e-12 73.2 43 76.7
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 8.1e-12 73.2 47 74.5
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 8.1e-12 73.2 43 79.1
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 8.1e-12 73.2 43 79.1
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 1.1e-11 72.8 48 70.8
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 1.1e-11 72.8 47 74.5
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.1e-11 72.8 48 68.8
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 1.1e-11 72.8 54 61.1
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.1e-11 72.8 53 66.0
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 1.1e-11 72.8 43 79.1
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 1.4e-11 72.4 43 79.1
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 1.4e-11 72.4 48 68.8
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 1.4e-11 72.4 54 61.1
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 1.4e-11 72.4 54 61.1
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 1.4e-11 72.4 54 61.1
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.4e-11 72.4 43 79.1
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 1.4e-11 72.4 54 61.1
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 1.8e-11 72.0 48 68.8
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 1.8e-11 72.0 48 68.8
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 1.8e-11 72.0 43 79.1
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.8e-11 72.0 43 79.1
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 1.8e-11 72.0 43 76.7
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.8e-11 72.0 43 76.7
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 2.3e-11 71.6 47 76.6
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.3e-11 71.6 43 76.7
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.3e-11 71.6 43 76.7
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.3e-11 71.6 42 81.0
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.3e-11 71.6 42 81.0
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 2.3e-11 71.6 43 79.1
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 3.1e-11 71.2 48 68.8
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 3.1e-11 71.2 48 68.8
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 3.1e-11 71.2 48 68.8
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 3.1e-11 71.2 43 74.4
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 3.1e-11 71.2 43 76.7
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 3.1e-11 71.2 51 62.7
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 3.1e-11 71.2 48 68.8
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 3.1e-11 71.2 54 59.3
AT5G27760 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 4.0e-11 70.9 48 66.7
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 4.0e-11 70.9 43 74.4
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 4.0e-11 70.9 48 66.7
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 4.0e-11 70.9 51 64.7
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 4.0e-11 70.9 43 79.1
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 5.2e-11 70.5 48 68.8
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 5.2e-11 70.5 43 72.1
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 5.2e-11 70.5 43 74.4
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 5.2e-11 70.5 48 70.8
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 5.2e-11 70.5 43 79.1
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 5.2e-11 70.5 43 74.4
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 5.2e-11 70.5 43 74.4
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 5.2e-11 70.5 54 59.3
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 5.2e-11 70.5 47 74.5
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 72.1
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 76.7
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 76.7
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 76.7
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 76.7
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 76.7
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 6.8e-11 70.1 43 72.1
DCAR_029391 Daucus carota HOM05D002454 ORTHO05D002581 8.9e-11 69.7 43 76.7
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 8.9e-11 69.7 43 76.7
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 1.2e-10 69.3 43 76.7
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.2e-10 69.3 43 69.8
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.2e-10 69.3 43 72.1
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 1.5e-10 68.9 43 74.4
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.5e-10 68.9 43 74.4
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 1.5e-10 68.9 43 72.1
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 1.5e-10 68.9 43 72.1
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 2.0e-10 68.6 43 72.1
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 2.0e-10 68.6 43 72.1
GSVIVG01031131001 Vitis vinifera HOM05D002454 ORTHO05D002581 2.0e-10 68.6 46 71.7
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 2.6e-10 68.2 43 72.1
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 3.4e-10 67.8 48 68.8
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 3.4e-10 67.8 48 68.8
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 3.4e-10 67.8 48 68.8
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 3.4e-10 67.8 48 68.8
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 3.4e-10 67.8 43 74.4
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 3.4e-10 67.8 51 60.8
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 4.4e-10 67.4 48 70.8
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 4.4e-10 67.4 43 72.1
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 4.4e-10 67.4 43 74.4
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 5.8e-10 67.0 51 62.7
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 5.8e-10 67.0 44 72.7
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 5.8e-10 67.0 43 72.1
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 5.8e-10 67.0 44 68.2
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 5.8e-10 67.0 44 68.2
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 5.8e-10 67.0 44 68.2
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 5.8e-10 67.0 44 68.2
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 7.5e-10 66.6 43 72.1
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 7.5e-10 66.6 43 72.1
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 9.8e-10 66.2 56 57.1
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 9.8e-10 66.2 43 69.8
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 9.8e-10 66.2 43 69.8
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 9.8e-10 66.2 48 64.6
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 9.8e-10 66.2 43 72.1
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 9.8e-10 66.2 51 60.8
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 9.8e-10 66.2 43 69.8
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 1.3e-09 65.9 48 66.7
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 1.7e-09 65.5 44 77.3
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 2.9e-09 64.7 48 64.6
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 2.9e-09 64.7 43 69.8
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 2.9e-09 64.7 44 65.9
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.4e-08 61.6 43 72.1
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 2.4e-08 61.6 43 62.8
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 7.1e-08 60.1 47 59.6
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.6e-07 58.9 30 86.7
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 2.7e-07 58.2 63 47.6
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 4.6e-07 57.4 43 65.1
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 1.7e-06 55.5 30 80.0
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.7e-06 55.5 30 80.0
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 1.7e-06 55.5 30 80.0
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.0e-06 54.7 30 73.3
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 3.0e-06 54.7 43 58.1
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 3.0e-06 54.7 44 56.8
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 5.1e-06 53.9 39 66.7


User provided reference genes

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