Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-78 296.6 152 100.0
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.0e-73 276.9 152 93.4
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.7e-63 246.1 152 84.9
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-59 233.0 152 83.6
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.6e-48 195.7 160 69.4
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-45 186.8 150 60.0
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-38 161.8 152 55.9
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.7e-37 159.1 147 51.7
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-30 136.3 140 46.4
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.6e-29 132.1 148 42.6
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.4e-28 130.2 154 44.8
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.3e-28 129.4 150 44.0
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-27 126.7 148 43.9
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.0e-27 126.3 148 43.9
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 5.7e-27 124.8 148 43.2
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 7.5e-27 124.4 151 42.4
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 9.8e-27 124.0 148 42.6
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.3e-26 120.9 151 41.7
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.0e-24 116.3 148 41.9
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.0e-24 116.3 121 46.3
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 2.7e-24 115.9 149 40.9
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 3.5e-24 115.5 145 42.1
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 7.7e-24 114.4 144 40.3
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.0e-23 114.0 147 42.9
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.3e-23 113.6 152 40.8
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.2e-23 112.8 147 39.5
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.9e-23 112.5 145 40.7
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 5.0e-23 111.7 148 38.5
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 5.0e-23 111.7 120 45.8
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.5e-23 111.3 147 43.5
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.1e-22 110.5 148 39.2
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.1e-22 110.5 148 39.2
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.5e-22 108.2 139 40.3
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.5e-22 108.2 148 39.2
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 9.5e-22 107.5 130 37.7
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.2e-21 107.1 128 41.4
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.6e-21 105.5 144 37.5
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-20 103.2 100 47.0
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 1.8e-20 103.2 111 42.3
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.2e-20 101.7 95 52.6
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 6.8e-20 101.3 140 37.9
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.8e-20 100.9 122 40.2
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-19 100.1 145 35.9
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.0e-19 99.8 110 42.7
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 2.6e-19 99.4 148 37.2
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.8e-19 97.4 144 34.7
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 1.7e-18 96.7 141 39.0
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 2.2e-18 96.3 141 36.2
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 4.9e-18 95.1 135 36.3
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.0e-17 91.3 105 40.0
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 7.0e-17 91.3 135 35.6
CSS0014976 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-16 90.5 131 40.5
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 4.5e-16 88.6 91 48.4
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 5.9e-16 88.2 77 49.4
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 7.8e-16 87.8 128 37.5
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 5.0e-15 85.1 111 40.5
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.6e-15 84.7 146 37.7
Lj1P1006T30 Lonicera japonica HOM05D008183 ORTHO05D007254 6.6e-15 84.7 130 34.6
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.3e-14 82.4 147 32.7
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.3e-14 82.0 148 33.1
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 2.1e-13 79.7 116 38.8
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 2.1e-13 79.7 150 32.7
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 2.8e-13 79.3 98 41.8
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 2.8e-13 79.3 127 35.4
CSS0036848 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 3.6e-13 79.0 84 44.0
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.7e-13 78.6 147 32.0
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 1.8e-12 76.6 149 33.6
CSS0049610 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 2.3e-12 76.3 98 41.8
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 3.0e-12 75.9 148 32.4
CSS0029699 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 4.0e-12 75.5 98 40.8
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.0e-12 75.5 98 40.8
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 4.0e-12 75.5 152 31.6
vmacro13033 Vaccinium macrocarpon HOM05D000076 ORTHO05D007254 4.0e-12 75.5 110 39.1
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 5.2e-12 75.1 149 34.2
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 6.8e-12 74.7 150 30.0
Lj3g0000535 Lotus japonicus HOM05D000003 ORTHO05D007254 1.5e-11 73.6 152 32.2
Sc05g0006150 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.5e-11 73.6 126 36.5
Lj7P396T52 Lonicera japonica HOM05D008183 ORTHO05D007254 2.0e-11 73.2 100 36.0
FvH4_3g43651 Fragaria vesca HOM05D008133 ORTHO05D009449 2.6e-11 72.8 150 28.7
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 2.6e-11 72.8 101 36.6
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 3.4e-11 72.4 150 32.0
Lj1g0005496 Lotus japonicus HOM05D000003 ORTHO05D007254 4.4e-11 72.0 149 32.2
Lj1g0015022 Lotus japonicus HOM05D000003 ORTHO05D000167 4.4e-11 72.0 149 31.5
Lj3g0002323 Lotus japonicus HOM05D000003 ORTHO05D007254 4.4e-11 72.0 138 32.6
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 5.7e-11 71.6 150 32.7
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 7.5e-11 71.2 86 41.9
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 9.8e-11 70.9 144 30.6
Rhsim12G0201300 Rhododendron simsii HOM05D002908 ORTHO05D009379 1.7e-10 70.1 87 44.8
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-10 69.7 149 31.5
CSS0033631 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.9e-10 69.3 104 33.7
Sc19g0003070 Simmondsia chinensis HOM05D013236 ORTHO05D007254 2.9e-10 69.3 84 41.7
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 3.7e-10 68.9 149 28.9
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 6.4e-10 68.2 101 35.6
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 8.3e-10 67.8 104 36.5
Sc20g0000530 Simmondsia chinensis HOM05D013236 ORTHO05D007254 8.3e-10 67.8 135 31.1
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 8.3e-10 67.8 142 33.8
FvH4_6g16031 Fragaria vesca HOM05D000003 ORTHO05D009449 1.4e-09 67.0 148 32.4
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 1.4e-09 67.0 151 31.8
Rhsim03G0129900 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.8e-09 66.6 81 39.5
COL.COLO4_04041 Corchorus olitorius HOM05D008133 ORTHO05D007254 2.4e-09 66.2 127 33.9
COL.COLO4_17181 Corchorus olitorius HOM05D008183 ORTHO05D007254 4.1e-09 65.5 124 29.8
FvH4_4g25931 Fragaria vesca HOM05D011624 ORTHO05D014221 4.1e-09 65.5 145 29.0
FvH4_6g30670 Fragaria vesca HOM05D021529 ORTHO05D009449 4.1e-09 65.5 148 30.4
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 7.0e-09 64.7 149 28.2
Atru.chr2.49 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-08 63.9 149 30.9
Rhsim03G0007500 Rhododendron simsii HOM05D033359 ORTHO05D340347 1.2e-08 63.9 103 35.0
Eucgr.C01564 Eucalyptus grandis HOM05D008183 ORTHO05D007254 1.6e-08 63.5 148 28.4
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 1.6e-08 63.5 127 33.9
Sc06g0010720 Simmondsia chinensis HOM05D009348 ORTHO05D015627 1.6e-08 63.5 134 32.1
Atru.chr5.1534 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-08 63.2 149 27.5
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 2.0e-08 63.2 149 32.2
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 2.0e-08 63.2 150 26.7
Lj3C625T2 Lonicera japonica HOM05D008183 ORTHO05D007254 2.0e-08 63.2 84 40.5
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 2.0e-08 63.2 135 32.6
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 2.0e-08 63.2 143 27.3
vmacro18048 Vaccinium macrocarpon HOM05D000611 ORTHO05D004334 2.0e-08 63.2 78 43.6
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 3.5e-08 62.4 149 30.9
Haze_05932 Corylus avellana HOM05D009031 ORTHO05D000167 3.5e-08 62.4 152 27.6
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 4.6e-08 62.0 151 26.5
FvH4_5g31281 Fragaria vesca HOM05D008133 ORTHO05D009449 4.6e-08 62.0 132 28.8
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 4.6e-08 62.0 86 34.9
Lj2g0007703 Lotus japonicus HOM05D000003 ORTHO05D000126 4.6e-08 62.0 135 32.6
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 5.9e-08 61.6 138 29.0
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 5.9e-08 61.6 149 28.9
COL.COLO4_36554 Corchorus olitorius HOM05D000003 ORTHO05D015627 1.0e-07 60.8 75 40.0
Prupe.2G216600 Prunus persica HOM05D008133 ORTHO05D009449 1.0e-07 60.8 152 30.3
Lj2g0021189 Lotus japonicus HOM05D000003 ORTHO05D000004 1.3e-07 60.5 126 32.5
Sc07g0002440 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.3e-07 60.5 73 45.2
vmacro01918 Vaccinium macrocarpon HOM05D008183 ORTHO05D007254 1.3e-07 60.5 71 46.5
Lj9P645T45 Lonicera japonica HOM05D008183 ORTHO05D007254 1.7e-07 60.1 118 29.7
CSS0002638 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 2.3e-07 59.7 100 39.0
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-07 59.7 76 38.2
CSS0025139 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 2.3e-07 59.7 100 39.0
PSO832G3082 Papaver somniferum HOM05D007919 ORTHO05D006738 2.3e-07 59.7 148 29.7
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 3.0e-07 59.3 150 28.0
COL.COLO4_12191 Corchorus olitorius HOM05D008133 ORTHO05D009449 3.0e-07 59.3 136 27.9
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 3.0e-07 59.3 151 27.8
QL05p051227 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-07 59.3 150 28.0
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 3.0e-07 59.3 130 30.8
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-07 58.9 148 26.4
CSS0044445 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 3.9e-07 58.9 77 41.6
FvH4_2g34753 Fragaria vesca HOM05D000003 ORTHO05D014221 3.9e-07 58.9 150 27.3
Lj1P880T38 Lonicera japonica HOM05D008183 ORTHO05D007254 3.9e-07 58.9 100 32.0
PSO063G1165 Papaver somniferum HOM05D008740 ORTHO05D006738 3.9e-07 58.9 152 30.9
Atru.chr1.3769 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-07 58.5 145 29.0
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-07 58.5 151 27.8
COL.COLO4_10073 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.0e-07 58.5 113 30.1
Sc19g0005760 Simmondsia chinensis HOM05D013953 ORTHO05D016376 6.6e-07 58.2 118 34.7
Atru.chr1.1585 Acer truncatum HOM05D000003 ORTHO05D000167 8.6e-07 57.8 152 25.0
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-07 57.8 139 28.8
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-07 57.8 151 27.2
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-07 57.8 149 27.5
Haze_03983 Corylus avellana HOM05D009031 ORTHO05D000167 8.6e-07 57.8 150 28.7
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 57.4 152 28.9
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 1.5e-06 57.0 150 26.7
PSO017G6533 Papaver somniferum HOM05D013112 ORTHO05D014824 1.5e-06 57.0 104 35.6
FAN28G2522 Fragaria x ananassa HOM05D015403 ORTHO05D010713 1.9e-06 56.6 134 33.6
RcHm_v2.0_Chr4g0422501 Rosa chinensis HOM05D000003 ORTHO05D000022 1.9e-06 56.6 148 31.1
Nitab4.5_0005843g0030 Nicotiana tabacum HOM05D007931 ORTHO05D010331 2.5e-06 56.2 139 29.5
Rhsim09G0012500 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.5e-06 56.2 144 28.5
RcHm_v2.0_Chr5g0040301 Rosa chinensis HOM05D008133 ORTHO05D009449 2.5e-06 56.2 83 38.6
TWI81G0012 Tripterygium wilfordii HOM05D000155 ORTHO05D000022 2.5e-06 56.2 139 28.1
vmacro10044 Vaccinium macrocarpon HOM05D000500 ORTHO05D000367 2.5e-06 56.2 79 39.2
AUR62022548 Chenopodium quinoa HOM05D000051 ORTHO05D000015 3.3e-06 55.8 137 32.1
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 3.3e-06 55.8 150 28.0
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-06 55.5 151 25.8
RhsimUnG0189600 Rhododendron simsii HOM05D000038 ORTHO05D000423 4.3e-06 55.5 63 41.3
Atru.chr13.1861 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-06 55.1 152 27.0
Atru.chr11.306 Acer truncatum HOM05D000003 ORTHO05D000167 7.3e-06 54.7 89 37.1
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 7.3e-06 54.7 149 25.5
Prupe.3G190000 Prunus persica HOM05D008133 ORTHO05D009449 7.3e-06 54.7 106 34.0
Atru.chr4.85 Acer truncatum HOM05D000003 ORTHO05D000167 9.5e-06 54.3 147 25.9
vmacro05176 Vaccinium macrocarpon HOM05D000646 ORTHO05D009105 9.5e-06 54.3 57 45.6
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 9.5e-06 54.3 72 37.5


User provided reference genes

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