Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 0.0e+00 1211.8 620 100.0
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.6e-275 951.8 597 85.3
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 2.2e-250 869.0 596 77.3
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 2.5e-238 828.9 597 74.5
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 7.3e-238 827.4 597 74.7
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 3.2e-233 812.0 596 73.7
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.0e-223 780.4 601 69.4
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.0e-223 780.4 601 69.4
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 1.1e-214 750.4 590 66.6
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 1.4e-212 743.4 602 66.1
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 9.9e-211 737.3 606 64.7
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 8.4e-210 734.2 603 64.8
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 4.6e-208 728.4 599 64.9
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.0e-207 727.2 594 64.6
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 8.7e-207 724.2 608 63.5
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.1e-206 723.8 594 64.6
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 4.3e-206 721.8 591 66.5
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 1.3e-205 720.3 592 65.2
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.8e-205 719.2 572 67.7
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 3.7e-205 718.8 595 64.7
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 4.8e-205 718.4 599 64.6
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.8e-204 716.5 599 64.6
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.7e-202 709.9 592 64.5
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 6.5e-202 708.0 599 63.6
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 8.4e-202 707.6 590 63.9
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 4.2e-201 705.3 591 63.5
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 4.2e-201 705.3 615 62.1
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 1.2e-200 703.7 603 62.7
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 1.6e-200 703.4 615 62.1
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 2.1e-200 703.0 596 62.9
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 1.0e-199 700.7 618 60.8
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 8.7e-199 697.6 593 63.2
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 1.5e-198 696.8 597 62.3
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 1.9e-198 696.4 598 63.0
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 1.9e-198 696.4 591 62.9
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.3e-198 695.7 615 61.1
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 2.1e-197 693.0 591 62.8
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.1e-196 689.1 615 60.8
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 5.3e-196 688.3 590 63.7
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 1.5e-195 686.8 595 61.2
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 3.4e-195 685.6 591 61.9
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 3.4e-195 685.6 592 63.5
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 5.8e-195 684.9 591 61.8
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 7.6e-195 684.5 589 62.1
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 7.6e-195 684.5 591 62.1
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.0e-194 684.1 591 62.1
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 2.9e-194 682.6 598 62.9
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.9e-194 682.6 627 59.8
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 5.0e-194 681.8 613 58.1
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 1.1e-193 680.6 602 60.1
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 2.5e-193 679.5 613 58.4
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 3.2e-193 679.1 608 61.2
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 3.2e-193 679.1 592 61.0
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 9.3e-193 677.6 592 61.8
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 2.1e-192 676.4 592 60.3
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 6.7e-191 671.4 596 60.9
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 8.7e-191 671.0 596 60.4
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 5.7e-190 668.3 603 59.5
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 9.7e-190 667.5 591 60.2
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 2.8e-189 666.0 592 59.0
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 5.3e-188 661.8 618 57.6
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 6.9e-188 661.4 592 59.8
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 6.9e-188 661.4 597 61.6
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 5.9e-187 658.3 591 59.2
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 2.9e-186 656.0 593 59.9
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.1e-185 654.1 593 60.0
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 1.1e-185 654.1 591 60.4
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 5.5e-185 651.7 593 60.5
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 8.8e-183 644.4 597 59.6
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 2.0e-182 643.3 590 59.7
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 4.3e-182 642.1 603 57.9
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 3.7e-181 639.0 590 58.0
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.4e-180 637.1 601 58.4
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 1.4e-180 637.1 601 59.9
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 4.1e-180 635.6 593 59.0
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 5.3e-180 635.2 602 57.6
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 6.5e-178 628.2 597 58.8
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.4e-177 627.1 593 57.3
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 2.1e-176 623.2 600 57.7
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 3.6e-176 622.5 596 58.1
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 2.4e-172 609.8 518 67.4
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 3.1e-172 609.4 591 56.0
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 4.1e-172 609.0 598 57.7
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 1.5e-171 607.1 654 54.0
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 4.5e-171 605.5 597 59.3
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 8.5e-170 601.3 596 57.9
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 4.2e-169 599.0 597 58.8
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 5.5e-169 598.6 597 58.5
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 5.5e-169 598.6 597 58.5
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 7.2e-169 598.2 597 58.1
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 1.2e-168 597.4 598 57.7
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 2.1e-168 596.7 597 57.0
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.1e-168 596.7 317 93.1
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 3.6e-168 595.9 598 57.0
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 4.7e-168 595.5 602 56.6
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 8.0e-168 594.7 597 57.6
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 4.0e-167 592.4 601 55.6
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 1.5e-166 590.5 601 56.7
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.0e-158 563.5 532 60.0
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 4.2e-153 545.8 618 51.0
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 1.8e-151 540.4 595 51.1
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 3.5e-147 526.2 600 49.8
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.0e-146 524.6 599 51.1
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 2.5e-145 520.0 561 53.3
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 3.0e-143 513.1 535 57.0
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 9.8e-142 508.1 593 50.8
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 2.2e-141 506.9 367 68.7
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.3e-125 454.5 603 46.1
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 3.5e-123 446.4 492 54.1
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.6e-107 394.4 330 61.8
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 1.9e-97 360.9 599 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 1.7e-85 321.2 658 35.0
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 7.1e-84 315.8 329 51.7
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 2.7e-83 313.9 324 51.2
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 5.3e-79 299.7 575 35.7
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 1.2e-75 288.5 603 35.3
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 1.8e-66 258.1 370 41.9
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 9.7e-65 252.3 304 52.0
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.3e-64 251.9 238 55.0
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 6.1e-51 206.5 273 47.3
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 7.0e-47 193.0 278 45.7
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 3.2e-36 157.5 140 60.7
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 5.2e-34 150.2 278 33.5
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 2.0e-33 148.3 129 61.2
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 1.9e-28 131.7 166 45.8
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 2.3e-26 124.8 350 28.6
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 1.6e-14 85.5 65 69.2
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 6.0e-14 83.6 99 46.5
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 6.6e-13 80.1 104 47.1


User provided reference genes

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