Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.5e-241 838.6 494 100.0
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-204 716.8 496 89.1
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 3.2e-172 609.0 503 75.0
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.6e-166 590.1 504 75.0
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.2e-147 527.3 503 70.2
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.8e-146 523.5 491 66.8
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 4.1e-143 512.3 540 63.5
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 4.6e-142 508.8 489 71.6
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.0e-141 507.7 512 67.8
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.6e-139 500.4 501 64.5
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 3.8e-136 489.2 434 70.3
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.0e-133 481.1 434 68.7
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 1.3e-133 480.7 476 64.7
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 8.7e-133 478.0 499 63.1
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 2.5e-132 476.5 490 64.9
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 4.3e-132 475.7 424 69.8
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.6e-132 475.3 433 70.9
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 6.2e-131 471.9 426 68.8
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 2.4e-130 469.9 445 66.3
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 2.4e-130 469.9 471 66.7
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 5.2e-130 468.8 504 61.9
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 5.2e-130 468.8 433 69.5
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 9.0e-130 468.0 450 67.3
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 9.0e-130 468.0 503 66.6
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 2.6e-129 466.5 433 68.8
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 3.4e-129 466.1 381 75.3
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 5.8e-129 465.3 425 72.0
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 7.6e-129 464.9 489 62.4
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 2.9e-128 463.0 479 66.0
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 4.9e-128 462.2 500 65.2
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 6.4e-128 461.8 456 66.2
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 8.4e-128 461.5 426 66.7
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 4.2e-127 459.1 431 64.3
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 5.4e-127 458.8 497 63.4
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 7.1e-127 458.4 493 66.5
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.6e-126 457.2 458 66.2
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 6.0e-126 455.3 504 61.1
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.3e-125 454.1 421 66.7
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 1.5e-124 450.7 428 68.0
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.5e-124 450.7 422 69.0
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 1.9e-124 450.3 431 63.6
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.9e-124 450.3 422 68.7
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 2.5e-124 449.9 434 68.2
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 4.3e-124 449.1 457 65.0
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 4.3e-124 449.1 454 60.8
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.3e-123 447.6 493 61.1
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.1e-122 444.5 461 63.6
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 7.6e-121 438.3 422 67.8
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 1.3e-120 437.6 426 65.7
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 4.9e-120 435.6 487 61.0
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 9.3e-119 431.4 499 57.9
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 6.0e-118 428.7 423 65.5
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 7.9e-118 428.3 488 60.7
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.3e-117 427.6 489 60.5
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.3e-117 426.8 487 60.2
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 5.1e-117 425.6 488 60.5
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 5.1e-117 425.6 685 46.6
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.6e-115 420.6 432 65.3
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 8.1e-115 418.3 513 58.7
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 4.0e-114 416.0 430 63.7
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 9.0e-114 414.8 387 68.2
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 1.5e-113 414.1 504 58.1
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 2.0e-113 413.7 489 59.3
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 2.6e-113 413.3 496 60.9
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 7.6e-113 411.8 489 59.5
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 9.9e-113 411.4 425 61.6
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 1.3e-112 411.0 411 66.4
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 2.2e-112 410.2 500 59.6
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.2e-112 410.2 422 64.7
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 8.4e-112 408.3 510 60.2
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.9e-111 407.1 409 66.5
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 5.5e-111 405.6 502 58.0
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.7e-110 403.3 503 56.7
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 7.9e-110 401.7 513 56.7
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 7.9e-110 401.7 513 56.7
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 7.9e-110 401.7 430 63.5
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 6.7e-109 398.7 495 60.4
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.3e-108 396.4 496 56.9
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 4.3e-108 396.0 433 61.2
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 2.1e-107 393.7 489 58.1
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 4.8e-107 392.5 436 60.6
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 4.0e-106 389.4 503 57.9
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.2e-105 387.9 502 56.6
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 4.2e-103 379.4 462 53.5
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 8.7e-101 371.7 503 56.5
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.1e-100 371.3 488 58.6
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 6.1e-94 349.0 418 58.1
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 8.8e-93 345.1 447 56.4
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 2.5e-92 343.6 421 54.9
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 4.8e-91 339.3 379 59.6
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 2.2e-88 330.5 478 51.7
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 2.2e-88 330.5 478 51.7
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 1.2e-86 324.7 287 71.8
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.9e-86 322.0 287 67.2
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 3.9e-85 319.7 432 50.9
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.1e-84 318.2 381 58.3
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.0e-84 317.4 484 48.3
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 2.6e-84 317.0 637 43.6
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 4.4e-84 316.2 294 71.1
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 4.8e-83 312.8 286 65.0
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 5.3e-82 309.3 330 62.4
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 1.1e-79 301.6 280 68.9
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 7.4e-76 288.9 285 64.2
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-75 287.0 500 48.0
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 3.7e-75 286.6 297 63.6
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 1.1e-71 275.0 467 49.7
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 8.0e-70 268.9 349 50.4
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 7.5e-68 262.3 328 58.2
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.6e-62 244.6 250 71.2
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 8.0e-62 242.3 188 70.7
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 9.8e-60 235.3 389 46.8
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 3.1e-58 230.3 330 48.8
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 3.8e-56 223.4 499 44.3
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 7.5e-52 209.1 364 49.2
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 4.7e-46 189.9 479 38.6
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 8.9e-37 159.1 103 83.5
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.5e-36 158.3 119 80.7
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 1.0e-32 145.6 169 57.4
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 2.3e-32 144.4 196 48.5
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 6.6e-32 142.9 178 62.4
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.5e-31 141.7 371 31.3
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.2e-30 138.7 87 82.8
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 7.5e-28 129.4 397 40.8
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 4.6e-25 120.2 97 78.4
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 3.3e-23 114.0 91 69.2
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 3.3e-23 114.0 60 88.3
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.2e-20 105.5 95 69.5
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.2e-20 105.5 89 77.5
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.7e-16 91.7 64 79.7
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.3e-16 91.3 59 74.6
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.0e-16 90.9 96 61.5
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 8.1e-14 82.8 88 60.2
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 2.6e-12 77.8 191 40.8
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 2.3e-08 64.7 43 74.4
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.9e-07 61.6 39 82.1
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 5.6e-07 60.1 100 42.0
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 2.8e-06 57.8 209 24.9


User provided reference genes

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