Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.6e-150 534.6 294 100.0
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 3.9e-149 531.6 294 98.3
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.2e-113 413.7 294 79.3
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 4.7e-110 401.7 295 74.6
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.8e-109 399.8 294 76.9
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 3.4e-108 395.6 310 72.3
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 3.4e-108 395.6 294 75.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 1.3e-99 367.1 295 71.9
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.2e-92 344.0 297 68.7
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.3e-91 340.5 309 65.7
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 3.7e-91 339.0 323 65.3
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.1e-90 337.4 306 66.7
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 5.4e-90 335.1 301 65.4
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 7.8e-89 331.3 314 65.0
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 7.8e-89 331.3 310 64.2
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.0e-88 330.9 309 64.1
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 3.9e-88 328.9 322 64.0
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 1.5e-87 327.0 327 62.7
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.5e-87 327.0 311 64.0
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 4.7e-86 322.0 296 64.2
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 8.1e-86 321.2 310 60.6
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.1e-85 320.9 306 63.1
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 4.0e-85 318.9 309 60.5
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 6.8e-85 318.2 342 56.7
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 8.9e-85 317.8 316 60.8
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 4.4e-84 315.5 304 62.2
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 2.9e-83 312.8 307 59.0
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.7e-83 312.4 309 60.2
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 3.7e-83 312.4 312 62.8
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 4.9e-83 312.0 316 58.5
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.9e-82 310.1 331 57.4
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.2e-81 307.4 305 63.3
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 2.1e-81 306.6 296 62.2
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 4.6e-81 305.4 311 58.5
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.3e-80 303.9 309 59.5
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 2.3e-80 303.1 317 59.3
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.3e-80 303.1 316 58.5
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 6.6e-80 301.6 313 57.2
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 6.6e-80 301.6 313 56.9
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 2.5e-79 299.7 300 62.7
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.3e-79 299.3 304 61.8
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 5.6e-79 298.5 307 57.7
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 5.6e-79 298.5 313 57.5
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 7.3e-79 298.1 314 57.6
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 7.3e-79 298.1 224 71.9
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 1.2e-78 297.4 306 62.4
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 1.6e-78 297.0 304 59.9
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.6e-78 295.8 314 58.3
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 4.7e-78 295.4 297 60.3
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 2.3e-77 293.1 314 57.0
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.1e-77 292.7 314 57.0
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 8.9e-77 291.2 334 55.4
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.5e-76 290.4 316 57.3
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 2.0e-76 290.0 316 57.0
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 5.8e-76 288.5 310 60.6
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 9.9e-76 287.7 314 57.6
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 2.2e-75 286.6 300 59.0
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 6.4e-75 285.0 323 55.4
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.4e-74 283.9 309 56.3
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 4.1e-74 282.3 315 56.5
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 9.2e-74 281.2 349 51.6
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 9.2e-74 281.2 333 54.7
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.2e-73 280.8 297 57.2
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 1.6e-73 280.4 316 55.4
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 4.6e-73 278.9 318 53.8
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 7.8e-73 278.1 322 55.3
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 2.3e-72 276.6 310 54.2
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 3.9e-72 275.8 315 52.7
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.1e-71 274.2 310 53.5
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 2.5e-71 273.1 314 53.2
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 3.3e-71 272.7 315 54.3
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 7.3e-71 271.6 201 75.6
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 7.3e-71 271.6 306 57.5
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.7e-70 268.9 316 52.8
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.7e-70 268.9 316 52.8
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 8.1e-70 268.1 309 53.1
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 8.1e-70 268.1 309 53.1
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 2.4e-69 266.5 319 53.3
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.2e-68 264.2 307 51.1
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 1.2e-68 264.2 315 52.1
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 1.5e-68 263.8 308 52.9
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 2.6e-68 263.1 317 55.2
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.3e-67 260.8 316 51.9
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.9e-67 258.8 316 50.0
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 4.9e-67 258.8 295 55.6
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-66 257.7 259 58.7
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 1.4e-66 257.3 259 58.3
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.9e-66 256.9 303 52.8
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 5.4e-66 255.4 322 50.3
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 7.1e-66 255.0 326 48.8
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 1.2e-65 254.2 286 53.8
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 6.0e-65 251.9 315 50.5
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 3.9e-64 249.2 316 51.6
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 6.6e-64 248.4 307 49.8
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 9.6e-63 244.6 303 50.8
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 2.1e-62 243.4 307 50.8
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 4.8e-62 242.3 175 78.3
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 4.8e-62 242.3 328 50.0
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 4.0e-61 239.2 312 50.6
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 5.8e-60 235.3 254 55.5
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 5.4e-58 228.8 298 50.3
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 9.3e-58 228.0 212 64.2
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.0e-57 225.3 294 49.3
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.1e-55 221.1 316 47.2
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 8.1e-54 214.9 194 60.3
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 8.1e-54 214.9 194 60.3
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 1.2e-52 211.1 262 50.0
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.2e-52 211.1 309 46.6
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 5.8e-52 208.8 195 59.0
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 2.9e-51 206.5 175 66.3
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.1e-50 204.5 309 46.6
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 1.9e-50 203.8 343 44.3
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 7.1e-50 201.8 307 45.0
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 7.1e-50 201.8 307 45.0
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.7e-49 199.9 237 54.9
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.3e-48 197.6 294 44.2
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 8.7e-48 194.9 213 54.0
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 8.7e-48 194.9 204 56.4
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.1e-47 194.5 249 52.2
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.4e-45 187.6 204 53.4
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 5.3e-45 185.7 230 55.2
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 1.7e-43 180.6 260 44.2
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 2.2e-43 180.3 207 51.7
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.5e-42 176.8 207 51.7
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 1.6e-41 174.1 262 46.6
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 1.8e-40 170.6 333 39.0
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.3e-38 164.5 261 47.5
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.6e-38 164.1 101 83.2
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.1e-37 159.8 206 51.5
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.6e-36 156.8 308 40.3
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 5.9e-36 155.6 211 50.2
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.3e-35 154.5 170 54.7
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 7.2e-34 148.7 300 39.3
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 7.2e-34 148.7 213 44.1
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 7.9e-33 145.2 202 42.1
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.9e-31 140.6 247 44.1
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.3e-31 139.8 203 48.8
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 2.8e-30 136.7 108 64.8
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.1e-29 133.3 107 62.6
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.7e-27 127.5 98 70.4
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 1.1e-26 124.8 103 66.0
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 4.6e-25 119.4 149 53.7
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 9.7e-23 111.7 297 36.0
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 3.8e-19 99.8 109 56.0
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.6e-17 94.4 125 52.8
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 2.1e-17 94.0 95 51.6
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 6.7e-16 89.0 71 70.4
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 8.2e-14 82.0 94 55.3
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 9.1e-13 78.6 95 50.5
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 3.6e-09 66.6 53 66.0
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.3e-08 63.9 192 32.3
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 6.7e-08 62.4 138 36.2
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 2.6e-07 60.5 147 38.8


User provided reference genes

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