Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.2e-41 171.8 81 100.0
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 2.3e-19 98.6 89 65.2
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.3e-19 98.6 79 62.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 9.8e-18 93.2 78 61.5
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.2e-16 88.2 82 56.1
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 7.0e-16 87.0 82 51.2
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.6e-15 84.3 80 55.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.6e-15 84.3 80 55.0
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.6e-15 84.3 78 57.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 3.0e-14 81.6 81 51.9
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 6.6e-14 80.5 83 50.6
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.5e-13 79.3 71 53.5
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 4.3e-13 77.8 81 50.6
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 4.3e-13 77.8 81 50.6
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 4.3e-13 77.8 82 52.4
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.3e-13 77.8 75 56.0
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.6e-13 77.4 84 51.2
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 5.6e-13 77.4 76 55.3
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.6e-13 77.4 71 52.1
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.6e-13 77.4 84 51.2
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.3e-13 77.0 71 52.1
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 9.5e-13 76.6 71 52.1
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.5e-13 76.6 86 51.2
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-12 76.3 82 50.0
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.8e-12 75.1 82 46.3
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 2.8e-12 75.1 71 50.7
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 3.6e-12 74.7 71 50.7
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 3.6e-12 74.7 73 50.7
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 4.7e-12 74.3 77 50.6
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 4.7e-12 74.3 82 48.8
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 6.2e-12 73.9 71 49.3
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.1e-11 73.2 81 46.9
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.1e-11 73.2 75 52.0
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.1e-11 73.2 82 43.9
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.4e-11 72.8 83 44.6
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.3e-11 72.0 81 46.9
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 2.3e-11 72.0 80 47.5
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.1e-11 71.6 80 50.0
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.1e-11 71.6 83 53.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.1e-11 71.6 83 53.0
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.1e-11 71.6 83 53.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 3.1e-11 71.6 83 51.8
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 4.0e-11 71.2 74 52.7
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 5.2e-11 70.9 79 49.4
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 5.2e-11 70.9 73 53.4
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 5.2e-11 70.9 82 48.8
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 8.9e-11 70.1 78 51.3
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 8.9e-11 70.1 74 50.0
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-10 69.7 59 55.9
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-10 69.7 59 55.9
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.2e-10 69.7 71 47.9
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.2e-10 69.7 78 47.4
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.5e-10 69.3 82 45.1
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-10 68.9 81 44.4
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 2.6e-10 68.6 84 46.4
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.6e-10 68.6 79 45.6
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.6e-10 68.6 81 45.7
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.4e-10 68.2 79 46.8
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 3.4e-10 68.2 73 49.3
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 5.8e-10 67.4 76 50.0
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 5.8e-10 67.4 76 43.4
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 7.5e-10 67.0 71 49.3
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 7.5e-10 67.0 71 49.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.5e-10 67.0 59 52.5
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 7.5e-10 67.0 74 45.9
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.5e-10 67.0 71 47.9
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 9.9e-10 66.6 79 45.6
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.9e-10 66.6 83 49.4
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 1.3e-09 66.2 73 49.3
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.3e-09 66.2 83 45.8
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.7e-09 65.9 111 38.7
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 2.2e-09 65.5 84 45.2
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 3.7e-09 64.7 76 42.1
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.7e-09 64.7 55 54.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.9e-09 64.3 78 44.9
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.9e-09 64.3 81 43.2
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 6.4e-09 63.9 81 42.0
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 8.3e-09 63.5 75 48.0
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 8.3e-09 63.5 77 44.2
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-08 63.2 78 43.6
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.1e-08 63.2 84 45.2
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 1.1e-08 63.2 75 41.3
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.4e-08 62.8 82 45.1
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.4e-08 62.8 81 44.4
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 2.4e-08 62.0 77 45.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.2e-08 61.6 69 49.3
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 3.2e-08 61.6 61 49.2
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.1e-08 61.2 78 44.9
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 5.4e-08 60.8 79 44.3
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.1e-08 60.5 79 44.3
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 7.1e-08 60.5 80 37.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 7.1e-08 60.5 43 62.8
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.6e-07 59.3 78 35.9
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.6e-07 59.3 77 44.2
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 6.0e-07 57.4 75 42.7
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 7.8e-07 57.0 69 47.8
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.7e-06 55.8 83 41.0
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 3.0e-06 55.1 77 37.7


User provided reference genes

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