Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.7e-197 691.8 344 100.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.6e-133 479.9 501 54.1
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 3.4e-128 462.2 501 53.7
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 7.6e-128 461.1 501 53.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 9.3e-126 454.1 501 51.9
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 3.7e-122 442.2 502 51.8
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.5e-120 436.8 501 51.5
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.3e-119 433.7 482 53.3
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 5.5e-118 428.3 465 52.7
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.2e-117 427.2 500 50.2
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 2.5e-115 419.5 497 50.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 3.3e-115 419.1 489 50.9
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.6e-114 416.8 497 50.1
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 6.3e-114 414.8 497 49.1
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.9e-113 411.4 497 49.7
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 2.0e-112 409.8 501 49.3
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 3.4e-112 409.1 497 49.5
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.7e-112 407.9 497 49.3
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.7e-112 407.9 497 49.3
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.7e-111 406.8 502 48.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.2e-111 406.4 501 48.9
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 4.2e-110 402.1 501 47.7
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.2e-110 402.1 496 49.2
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.2e-110 401.4 497 48.9
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 1.6e-109 400.2 497 48.7
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 6.1e-109 398.3 494 48.8
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-108 396.4 497 48.5
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 5.7e-107 391.7 500 45.8
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 7.4e-107 391.3 500 47.0
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 7.4e-107 391.3 502 47.8
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.7e-106 390.2 502 47.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 2.8e-106 389.4 501 45.5
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 3.7e-106 389.0 384 58.3
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 4.8e-106 388.7 501 47.3
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 8.2e-106 387.9 499 48.1
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 1.4e-105 387.1 488 46.9
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.4e-105 387.1 501 45.9
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.4e-105 387.1 500 46.8
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.4e-105 386.3 501 47.3
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 4.1e-105 385.6 504 46.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.5e-104 383.6 501 45.7
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 5.9e-104 381.7 499 46.9
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 5.9e-104 381.7 503 45.9
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.9e-104 381.7 501 46.5
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 7.7e-104 381.3 501 46.5
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.0e-103 380.9 502 45.8
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.0e-103 380.9 503 46.7
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.7e-103 380.2 494 47.0
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.2e-103 379.8 501 46.9
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.9e-103 379.4 496 47.4
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.9e-103 379.4 470 48.1
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 3.8e-103 379.0 500 46.0
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.4e-102 377.1 478 48.5
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.9e-102 376.7 502 45.4
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 2.5e-102 376.3 496 46.6
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 3.2e-102 375.9 494 46.8
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 4.2e-102 375.6 502 46.2
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 5.5e-102 375.2 496 47.0
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 7.2e-102 374.8 496 47.0
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.6e-101 373.6 504 46.0
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.1e-101 373.2 496 47.0
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 2.7e-101 372.9 502 47.0
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 3.6e-101 372.5 496 46.2
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 6.1e-101 371.7 504 45.4
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 6.1e-101 371.7 496 47.0
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.4e-100 370.5 503 44.7
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 2.3e-100 369.8 503 46.5
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 5.1e-100 368.6 501 44.9
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.1e-99 367.5 475 46.9
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.5e-99 367.1 505 44.6
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 9.7e-99 364.4 502 45.2
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.2e-98 363.2 503 44.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 8.2e-98 361.3 500 46.0
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 8.2e-98 361.3 499 44.9
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.4e-97 360.5 500 45.8
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.4e-97 359.8 500 44.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.4e-97 359.8 487 46.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 7.0e-97 358.2 502 44.2
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.6e-96 356.3 502 44.4
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 3.5e-96 355.9 502 45.4
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 4.5e-96 355.5 502 44.8
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 5.9e-96 355.1 502 44.8
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 2.2e-95 353.2 505 44.0
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 8.5e-95 351.3 502 43.8
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.1e-94 350.9 499 45.3
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.1e-94 350.9 512 43.8
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 3.2e-94 349.4 503 43.9
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.2e-93 347.4 484 46.3
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.6e-93 345.9 500 43.8
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.0e-92 344.4 411 49.6
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.8e-92 343.6 502 44.2
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 6.7e-92 341.7 500 43.4
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.5e-91 340.5 488 42.8
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 4.8e-90 335.5 500 44.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 5.3e-89 332.0 507 41.6
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 7.0e-89 331.6 502 43.2
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 9.1e-89 331.3 500 42.0
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.3e-87 327.4 505 42.0
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.9e-87 326.2 489 41.9
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 6.5e-87 325.1 509 41.3
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.1e-86 324.3 500 41.4
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 1.1e-86 324.3 483 44.7
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 1.5e-86 323.9 505 42.4
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 3.2e-86 322.8 360 54.4
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 3.2e-86 322.8 396 48.2
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.2e-86 322.4 226 70.8
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 9.4e-86 321.2 465 44.7
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 2.1e-85 320.1 489 42.3
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.0e-84 317.8 505 41.6
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.8e-84 317.0 234 68.8
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 3.0e-84 316.2 466 43.6
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 5.2e-84 315.5 504 41.3
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 6.8e-84 315.1 501 41.5
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 4.8e-82 308.9 494 39.5
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.1e-81 307.8 496 40.5
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 2.0e-80 303.5 503 41.6
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.9e-80 302.0 452 43.1
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 6.3e-74 282.0 483 40.4
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-72 277.7 367 46.3
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 5.9e-72 275.4 503 36.8
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.5e-70 270.0 226 59.7
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 2.5e-70 270.0 248 58.1
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 4.3e-70 269.2 502 36.1
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 3.6e-69 266.2 235 58.7
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 2.0e-64 250.4 221 57.5
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.6e-59 233.4 226 52.2
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.4e-57 227.6 349 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 6.0e-56 222.2 226 49.6
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 5.0e-55 219.2 220 50.5
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 6.6e-55 218.8 248 46.4
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 2.3e-52 210.3 207 53.6
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 2.2e-50 203.8 226 46.0
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.2e-35 154.8 400 34.0
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 7.6e-35 152.1 216 40.7
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.6e-32 144.4 217 36.4
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 9.0e-28 128.6 243 34.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 7.1e-17 92.4 63 74.6
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 6.0e-16 89.4 68 70.6
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 9.6e-14 82.0 250 32.0
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.7e-10 71.2 94 42.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.3e-07 61.6 122 29.5
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 3.3e-06 57.0 51 54.9


User provided reference genes

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