Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011897 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.7e-94 349.4 176 100.0
CSS0009698 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 7.9e-89 330.5 176 94.9
CSS0019604 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 8.2e-86 320.5 191 87.4
CSS0007995 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 9.1e-85 317.0 174 93.1
CSS0023575 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 5.7e-63 244.6 190 71.1
Actinidia32353 Actinidia chinensis HOM05D001299 ORTHO05D009516 4.1e-61 238.4 178 71.3
GSVIVG01037941001 Vitis vinifera HOM05D001299 ORTHO05D009516 1.0e-59 233.8 177 68.4
TAR626G1915 Trochodendron aralioides HOM05D001299 ORTHO05D009516 9.5e-58 227.3 177 68.4
FvH4_3g11560 Fragaria vesca HOM05D001299 ORTHO05D009516 2.1e-57 226.1 177 65.5
FAN16G0158 Fragaria x ananassa HOM05D001299 ORTHO05D009516 2.1e-57 226.1 177 65.5
Haze_05959 Corylus avellana HOM05D001299 ORTHO05D009516 1.0e-56 223.8 186 62.9
RcHm_v2.0_Chr5g0018511 Rosa chinensis HOM05D001299 ORTHO05D009516 1.0e-56 223.8 177 65.5
Lj6g0006807 Lotus japonicus HOM05D001299 ORTHO05D009516 1.8e-56 223.0 177 64.4
FAN21G1530 Fragaria x ananassa HOM05D001299 ORTHO05D009516 2.3e-56 222.6 177 65.0
FAN25G0007 Fragaria x ananassa HOM05D001299 ORTHO05D009516 2.3e-56 222.6 177 64.4
Lalb_Chr15g0089001 Lupinus albus HOM05D001299 ORTHO05D009516 3.0e-56 222.2 177 65.0
Cfa000759 Carpinus fangiana HOM05D001299 ORTHO05D009516 4.0e-56 221.9 177 65.0
Glyma.15G136200 Glycine max HOM05D001299 ORTHO05D009516 6.8e-56 221.1 177 63.3
Sed0008848 Sechium edule HOM05D001299 ORTHO05D009516 1.2e-55 220.3 177 64.4
Potri.011G155500 Populus trichocarpa HOM05D001299 ORTHO05D009516 3.4e-55 218.8 186 62.9
MD10G1240700 Malus domestica HOM05D001299 ORTHO05D009516 4.4e-55 218.4 177 62.1
Sabra11G0144300 Salix brachista HOM05D001299 ORTHO05D009516 4.4e-55 218.4 177 65.0
Phvul.006G122300 Phaseolus vulgaris HOM05D001299 ORTHO05D009516 5.7e-55 218.0 177 62.7
Ca_00935_v3 Cicer arietinum L. HOM05D001299 ORTHO05D009516 9.8e-55 217.2 177 63.8
COL.COLO4_26895 Corchorus olitorius HOM05D001299 ORTHO05D009516 9.8e-55 217.2 186 60.8
Thecc.06G007400 Theobroma cacao HOM05D001299 ORTHO05D009516 9.8e-55 217.2 186 61.3
ClCG01G008880 Citrullus lanatus HOM05D001299 ORTHO05D009516 1.7e-54 216.5 186 60.8
Manes.03G067266 Manihot esculenta HOM05D001299 ORTHO05D009516 2.2e-54 216.1 177 62.7
Prupe.4G102900 Prunus persica HOM05D001299 ORTHO05D009516 2.2e-54 216.1 177 63.3
Eucgr.D01028 Eucalyptus grandis HOM05D001299 ORTHO05D009516 2.9e-54 215.7 177 62.7
TPR.G15970 Trifolium pratense HOM05D001299 ORTHO05D009516 6.4e-54 214.5 177 63.8
Ciclev10015984m.g Citrus clementina HOM05D001299 ORTHO05D009516 8.3e-54 214.2 177 62.1
Cc09_g07140 Coffea canephora HOM05D001299 ORTHO05D009516 8.3e-54 214.2 177 61.0
Lj1A1156T42 Lonicera japonica HOM05D001299 ORTHO05D009516 1.1e-53 213.8 177 63.3
VMungo0540G0517 Vigna mungo HOM05D001299 ORTHO05D009516 1.8e-53 213.0 177 61.0
Medtr2g032540 Medicago truncatula HOM05D001299 ORTHO05D009516 2.4e-53 212.6 177 62.7
Nn7g37865 Nelumbo nucifera HOM05D001299 ORTHO05D009516 3.2e-53 212.2 177 62.7
Gorai.010G142100 Gossypium raimondii HOM05D001299 ORTHO05D009516 9.2e-53 210.7 177 62.1
Gohir.D06G121900 Gossypium hirsutum HOM05D001299 ORTHO05D009516 1.2e-52 210.3 177 62.1
Psat1g163720 Pisum sativum HOM05D001299 ORTHO05D009516 1.2e-52 210.3 177 62.1
Atru.chr10.662 Acer truncatum HOM05D001299 ORTHO05D009516 1.6e-52 209.9 187 60.4
Duzib235G0189 Durio zibethinus HOM05D001299 ORTHO05D009516 2.0e-52 209.5 175 61.1
MSTRG.16317 Avicennia marina HOM05D001299 ORTHO05D009516 2.7e-52 209.1 177 60.5
arahy.Tifrunner.gnm1.ann1.85QD0P Arachis hypogaea HOM05D001299 ORTHO05D009516 4.6e-52 208.4 193 57.5
CANSAT35G1957 Cannabis sativa HOM05D001299 ORTHO05D009516 3.9e-51 205.3 184 61.4
MELO3C021811.2 Cucumis melo HOM05D001299 ORTHO05D009516 5.0e-51 204.9 211 54.5
Solyc02g069620.4 Solanum lycopersicum HOM05D001299 ORTHO05D009516 1.5e-50 203.4 177 58.2
MBI18_g26477_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 1.9e-50 203.0 177 59.3
Nitab4.5_0010415g0020 Nicotiana tabacum HOM05D001299 ORTHO05D009516 1.9e-50 203.0 199 53.8
Sopen02g018750 Solanum pennellii HOM05D001299 ORTHO05D009516 1.9e-50 203.0 177 57.6
Nitab4.5_0007613g0040 Nicotiana tabacum HOM05D001299 ORTHO05D009516 2.5e-50 202.6 199 53.3
CAN.G675.34 Capsicum annuum HOM05D001299 ORTHO05D009516 3.3e-50 202.2 173 59.0
CiPaw.10G111000 Carya illinoinensis HOM05D001299 ORTHO05D009516 3.3e-50 202.2 178 60.7
SalBow8G0840 Salvia bowleyana HOM05D001299 ORTHO05D009516 5.6e-50 201.4 177 57.6
SalBow8G5388 Salvia bowleyana HOM05D001299 ORTHO05D009516 5.6e-50 201.4 177 57.6
TWI38G0147 Tripterygium wilfordii HOM05D001299 ORTHO05D009516 9.5e-50 200.7 175 58.9
PGSC0003DMG400021135 Solanum tuberosum HOM05D001299 ORTHO05D009516 1.2e-49 200.3 200 51.5
arahy.Tifrunner.gnm1.ann1.ZN1LAP Arachis hypogaea HOM05D001299 ORTHO05D009516 2.8e-49 199.1 173 60.1
Lsat_1_v5_gn_1_130040 Lactuca sativa HOM05D001299 ORTHO05D009516 1.5e-47 193.4 195 53.8
HanXRQChr11g0341271 Helianthus annuus HOM05D001299 ORTHO05D009516 3.4e-47 192.2 174 56.9
ATR1098G024 Amborella trichopoda HOM05D001299 ORTHO05D009516 4.4e-47 191.8 177 55.9
Cpa.g.sc285.1 Carica papaya HOM05D001299 ORTHO05D009516 7.5e-47 191.0 148 64.9
CsaV3_1G037750 Cucumis sativus L. HOM05D001299 ORTHO05D009516 1.7e-46 189.9 161 61.5
Migut.M01940 Erythranthe guttata HOM05D001299 ORTHO05D009516 4.9e-46 188.3 178 54.5
THA.LOC104806244 Tarenaya hassleriana HOM05D001299 ORTHO05D009516 5.4e-45 184.9 173 54.3
SGA_v2.0_scaffold298G47639 Striga asiatica HOM05D001299 ORTHO05D009516 7.0e-45 184.5 223 47.5
BcaC06g31610 Brassica carinata HOM05D001299 ORTHO05D009516 4.6e-44 181.8 174 52.3
Os03g0781400 Oryza sativa ssp. japonica HOM05D001299 ORTHO05D009516 7.8e-44 181.0 176 53.4
A06p47140 Brassica napus HOM05D001299 ORTHO05D009516 1.3e-43 180.3 174 51.7
MBI18_g14310_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 1.3e-43 180.3 148 60.8
Thhalv10000979m.g Eutrema salsugineum HOM05D001299 ORTHO05D009516 6.6e-43 177.9 189 50.3
BcaC06g34545 Brassica carinata HOM05D001299 ORTHO05D009516 1.1e-42 177.2 175 50.9
AL8G15300 Arabidopsis lyrata HOM05D001299 ORTHO05D009516 1.9e-42 176.4 189 49.7
BraA06t27586Z Brassica rapa HOM05D001299 ORTHO05D009516 3.3e-42 175.6 182 50.5
Sp2g09310 Schrenkiella parvula HOM05D001299 ORTHO05D009516 4.3e-42 175.3 189 49.7
AT5G44520 Arabidopsis thaliana HOM05D001299 ORTHO05D009516 2.1e-41 172.9 174 50.6
Aa31LG9G8690 Aethionema arabicum HOM05D001299 ORTHO05D009516 2.8e-41 172.6 189 50.8
BolC7t43265H Brassica oleracea HOM05D001299 ORTHO05D009516 6.2e-41 171.4 182 49.5
C07p27350 Brassica napus HOM05D001299 ORTHO05D009516 1.4e-40 170.2 182 48.9
CSS0007807 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.4e-40 170.2 161 59.6
CSS0046492 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.4e-40 170.2 161 59.6
Carub.0008s0398 Capsella rubella HOM05D001299 ORTHO05D009516 1.4e-40 170.2 189 49.2
Peaxi162Scf00195g00521 Petunia axillaris HOM05D001299 ORTHO05D009516 1.2e-39 167.2 218 44.5
CSS0034631 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 2.0e-39 166.4 174 57.5
Pp3c16_13350 Physcomitrium patens HOM05D001299 ORTHO05D009516 9.2e-37 157.5 174 44.3
Glyma.09G030500 Glycine max HOM05D001299 ORTHO05D009516 2.3e-27 126.3 85 69.4
Gohir.A06G118100 Gossypium hirsutum HOM05D001299 ORTHO05D009516 1.2e-23 114.0 109 57.8
CDE03G0248 Ceratophyllum demersum HOM05D001299 ORTHO05D009516 2.9e-22 109.4 109 54.1
QL05p065109 Quercus lobata HOM05D001299 ORTHO05D009516 1.9e-21 106.7 69 75.4
Oeu063345.2 Olea europaea HOM05D001299 ORTHO05D009516 5.8e-15 85.1 57 71.9
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 8.4e-14 81.3 45 77.8
MCO05G574 Micromonas commoda HOM05D001299 ORTHO05D009516 2.1e-12 76.6 204 24.5
Pp3c5_830 Physcomitrium patens HOM05D001299 ORTHO05D009516 1.1e-10 70.9 82 50.0
PRCOL_00006791 Prasinoderma coloniale HOM05D001299 ORTHO05D009516 4.3e-10 68.9 84 42.9
Cre07.g314600 Chlamydomonas reinhardtii HOM05D001299 ORTHO05D009516 4.8e-09 65.5 87 39.1
CARHR178590 Cardamine hirsuta HOM05D001299 ORTHO05D009516 6.2e-09 65.1 52 59.6
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 3.1e-08 62.8 47 61.7


User provided reference genes

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