Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 2.6e-77 292.0 148 100.0
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 1.3e-31 140.2 161 57.1
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 4.1e-22 108.6 117 54.7
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 1.5e-19 100.1 112 50.9
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 3.3e-19 99.0 147 47.6
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 1.2e-18 97.1 122 51.6
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 2.8e-18 95.9 125 50.4
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 8.1e-18 94.4 127 47.2
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.1e-17 94.0 141 40.4
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 2.3e-17 92.8 125 50.4
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 2.3e-17 92.8 139 44.6
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 2.3e-17 92.8 111 49.5
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 8.9e-17 90.9 112 47.3
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 1.2e-16 90.5 112 47.3
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 1.2e-16 90.5 111 47.7
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 1.5e-16 90.1 128 46.1
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 1.5e-16 90.1 128 46.1
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 2.9e-15 85.9 127 40.9
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 3.7e-15 85.5 141 44.0
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 8.3e-15 84.3 126 46.8
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 1.4e-14 83.6 127 40.2
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.9e-14 83.2 130 44.6
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.9e-14 83.2 130 44.6
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 3.2e-14 82.4 99 48.5
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 4.1e-14 82.0 57 68.4
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 5.4e-14 81.6 140 42.1
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 7.1e-14 81.3 99 46.5
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 1.6e-13 80.1 128 38.3
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 3.5e-13 79.0 140 40.0
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 4.6e-13 78.6 107 45.8
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 1.3e-12 77.0 147 38.1
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 2.3e-12 76.3 97 47.4
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 3.0e-12 75.9 102 45.1
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 3.0e-12 75.9 130 40.8
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 8.6e-12 74.3 131 38.9
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 1.1e-11 73.9 113 43.4
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.9e-11 73.2 104 41.3
Lsat_1_v5_gn_5_146861 Lactuca sativa HOM05D008155 ORTHO05D010411 5.6e-11 71.6 131 40.5
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 9.5e-11 70.9 136 41.2
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 1.2e-10 70.5 99 41.4
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 2.1e-10 69.7 104 39.4
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 3.6e-10 68.9 113 40.7
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 3.6e-10 68.9 130 40.8
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 3.6e-10 68.9 131 38.9
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 4.7e-10 68.6 149 40.3
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 1.1e-09 67.4 119 40.3
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 1.4e-09 67.0 99 40.4
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 3.1e-09 65.9 44 65.9
EL10Ac6g15313 Beta vulgaris HOM05D008155 ORTHO05D010411 4.0e-09 65.5 101 41.6
TWI56G0796 Tripterygium wilfordii HOM05D008155 ORTHO05D010411 8.9e-09 64.3 148 37.2
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 4.4e-08 62.0 153 41.2
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 1.3e-07 60.5 54 48.1
Sed0026568 Sechium edule HOM05D008155 ORTHO05D010411 1.7e-07 60.1 102 40.2
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 2.2e-07 59.7 133 39.1
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 2.9e-07 59.3 125 35.2
Lsat_1_v5_gn_1_75801 Lactuca sativa HOM05D008155 ORTHO05D010411 4.9e-07 58.5 131 35.1
Sc03g0006010 Simmondsia chinensis HOM05D008155 ORTHO05D010411 4.9e-07 58.5 108 38.0
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 1.4e-06 57.0 124 34.7
THA.LOC104802769 Tarenaya hassleriana HOM05D008255 ORTHO05D011943 3.2e-06 55.8 49 53.1
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 9.2e-06 54.3 147 31.3


User provided reference genes

Program Settings