Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.0e-179 633.3 310 100.0
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.0e-176 621.7 310 98.1
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.2e-174 615.5 315 96.5
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 9.5e-146 520.4 307 80.8
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.0e-139 500.4 306 77.1
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 5.1e-139 498.0 338 71.0
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 9.6e-138 493.8 303 75.6
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 2.4e-136 489.2 306 75.8
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 6.9e-136 487.6 308 76.3
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 7.6e-135 484.2 306 75.2
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.4e-133 479.9 311 74.0
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.2e-132 476.9 306 74.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.1e-132 476.1 303 72.9
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 4.6e-132 474.9 310 71.0
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 6.0e-132 474.6 310 71.0
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 1.0e-131 473.8 335 69.0
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.7e-131 473.0 306 72.9
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.3e-131 472.6 310 71.9
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.9e-130 469.5 306 74.2
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.3e-130 468.4 307 71.7
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 5.6e-130 468.0 305 72.8
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 9.6e-130 467.2 306 72.5
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.1e-128 463.8 297 71.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 4.0e-128 461.8 310 69.7
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 9.0e-128 460.7 308 71.4
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 2.6e-127 459.1 306 72.5
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 3.4e-127 458.8 316 70.6
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 7.6e-127 457.6 303 70.3
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 8.4e-126 454.1 330 69.1
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 2.4e-125 452.6 310 69.4
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 4.2e-125 451.8 292 73.6
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 5.4e-125 451.4 311 68.5
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 7.1e-125 451.1 307 68.7
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 7.1e-125 451.1 310 67.4
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 7.1e-125 451.1 316 68.7
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 2.1e-124 449.5 310 68.4
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 2.1e-124 449.5 310 68.7
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 4.6e-124 448.4 308 69.2
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 7.9e-124 447.6 307 71.3
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.8e-123 446.4 303 69.3
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 2.3e-123 446.0 306 69.3
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 3.0e-123 445.7 306 70.6
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 3.9e-123 445.3 304 66.4
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 3.9e-123 445.3 310 67.1
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.1e-122 443.7 310 68.1
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.1e-122 443.7 307 68.4
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 1.1e-122 443.7 304 69.4
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.9e-122 443.0 310 68.7
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 2.5e-122 442.6 310 68.7
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 3.3e-122 442.2 281 75.8
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 5.6e-122 441.4 310 68.4
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 5.6e-122 441.4 302 68.9
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 7.4e-122 441.0 302 69.9
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 7.4e-122 441.0 310 65.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 9.6e-122 440.7 307 68.7
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 3.7e-121 438.7 308 67.2
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 4.8e-121 438.3 310 66.8
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 8.1e-121 437.6 305 67.9
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.8e-120 436.4 310 66.5
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 5.3e-120 434.9 306 67.6
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 6.9e-120 434.5 324 63.9
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.2e-119 433.7 313 67.1
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 2.0e-119 433.0 310 65.8
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 5.8e-119 431.4 303 66.7
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 7.6e-119 431.0 306 67.6
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.3e-118 430.3 310 64.2
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 3.8e-118 428.7 290 71.7
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 3.8e-118 428.7 310 64.2
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.4e-117 426.8 306 66.7
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.9e-117 426.4 310 64.8
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.4e-117 426.0 310 64.5
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.2e-116 423.7 310 64.8
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 2.7e-116 422.5 368 57.3
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.8e-115 419.9 311 64.3
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.5e-114 416.8 310 64.2
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 4.3e-114 415.2 277 68.6
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 5.6e-114 414.8 310 63.5
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 7.4e-114 414.5 309 66.0
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 3.7e-113 412.1 310 63.9
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 3.7e-113 412.1 310 63.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 6.2e-113 411.4 312 64.1
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 2.4e-112 409.5 310 62.9
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 9.0e-112 407.5 337 59.9
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.6e-111 406.0 315 65.4
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.8e-110 402.1 285 71.2
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 8.4e-110 401.0 283 68.2
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.6e-108 396.7 310 60.3
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 2.5e-106 389.4 308 61.4
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.4e-104 382.9 357 54.3
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 6.9e-104 381.3 308 61.4
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 5.0e-102 375.2 282 65.2
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 5.0e-102 375.2 282 65.6
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 6.5e-102 374.8 350 54.0
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.7e-100 369.4 306 61.1
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 4.1e-96 355.5 303 57.4
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.7e-94 350.1 314 55.1
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 2.9e-94 349.4 303 58.1
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 6.7e-91 338.2 302 55.6
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 6.9e-88 328.2 282 61.3
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.7e-86 323.6 283 56.9
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.7e-84 315.5 311 53.1
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.0e-83 314.3 305 51.8
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 6.7e-83 311.6 298 52.3
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 1.2e-79 300.8 220 64.5
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.7e-78 297.0 224 63.4
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.9e-78 296.2 309 48.9
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 5.0e-78 295.4 193 68.9
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.1e-77 294.3 224 62.1
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.2e-76 290.8 199 67.8
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 9.4e-69 264.6 200 64.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.1e-68 263.5 192 66.7
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.7e-68 262.3 166 76.5
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.7e-65 253.8 198 61.6
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 4.1e-64 249.2 232 57.3
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.1e-61 241.1 171 69.0
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.5e-61 240.0 220 56.4
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 4.1e-56 222.6 400 35.8
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.5e-53 214.2 131 83.2
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 6.8e-51 205.3 152 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 2.6e-50 203.4 208 51.0
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 9.8e-50 201.4 310 39.4
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.6e-44 184.1 137 65.7
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 9.2e-40 168.3 113 72.6
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 3.3e-37 159.8 306 32.7
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 6.8e-35 152.1 299 33.1
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.9e-33 146.7 272 34.9
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 7.8e-31 138.7 113 58.4
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.5e-29 134.4 81 77.8
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.3e-25 121.3 149 45.0
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.8e-18 95.9 85 57.6
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.3e-13 80.1 53 69.8
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 5.6e-13 79.3 64 60.9
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.8e-12 76.3 71 53.5
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.4e-11 74.7 80 51.2
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.0e-10 70.9 46 63.0
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 8.4e-09 65.5 119 34.5
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 1.8e-06 57.8 36 77.8


User provided reference genes

Program Settings