Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011840 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 1.6e-49 199.1 100 100.0
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 7.8e-49 196.8 100 99.0
vmacro04966 Vaccinium macrocarpon HOM05D005214 ORTHO05D005861 5.8e-44 180.6 100 89.0
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 1.1e-42 176.4 100 85.0
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 1.1e-42 176.4 99 85.9
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 9.2e-42 173.3 100 84.0
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 3.5e-41 171.4 100 81.0
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 4.6e-41 171.0 100 83.0
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 1.0e-40 169.9 100 81.0
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 2.3e-40 168.7 100 80.0
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 8.6e-40 166.8 100 78.0
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 1.1e-39 166.4 100 79.0
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 2.5e-39 165.2 100 77.0
AUR62005185 Chenopodium quinoa HOM05D005214 ORTHO05D005861 3.3e-39 164.9 100 77.0
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 4.3e-39 164.5 100 81.0
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 5.6e-39 164.1 100 77.0
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 7.3e-39 163.7 100 79.0
COL.COLO4_10501 Corchorus olitorius HOM05D005214 ORTHO05D005861 1.6e-38 162.5 100 78.0
Nitab4.5_0000524g0010 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.6e-38 162.5 100 77.0
CiPaw.07G020400 Carya illinoinensis HOM05D005214 ORTHO05D005861 2.1e-38 162.2 100 75.0
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 3.6e-38 161.4 100 76.0
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 3.6e-38 161.4 100 75.0
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 4.7e-38 161.0 100 76.0
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 6.2e-38 160.6 99 77.8
THA.LOC104802800 Tarenaya hassleriana HOM05D005214 ORTHO05D005861 6.2e-38 160.6 100 73.0
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 1.1e-37 159.8 100 75.0
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 1.1e-37 159.8 100 75.0
Cfa006617 Carpinus fangiana HOM05D005214 ORTHO05D005861 1.4e-37 159.5 100 76.0
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 1.8e-37 159.1 100 76.0
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 1.8e-37 159.1 99 77.8
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 2.4e-37 158.7 100 76.0
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 2.4e-37 158.7 100 75.0
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 2.4e-37 158.7 100 75.0
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 4.0e-37 157.9 100 74.0
CAN.G394.37 Capsicum annuum HOM05D005214 ORTHO05D005861 5.2e-37 157.5 100 74.0
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 1.5e-36 156.0 100 75.0
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 2.6e-36 155.2 98 75.5
TPR.G33205 Trifolium pratense HOM05D005214 ORTHO05D005861 2.6e-36 155.2 100 74.0
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 3.4e-36 154.8 100 75.0
Psat0s545g0120 Pisum sativum HOM05D005214 ORTHO05D005861 3.4e-36 154.8 100 73.0
Lalb_Chr18g0045711 Lupinus albus HOM05D005214 ORTHO05D005861 5.8e-36 154.1 100 73.0
PSO675G4608 Papaver somniferum HOM05D005214 ORTHO05D005861 5.8e-36 154.1 98 74.5
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 5.8e-36 154.1 100 73.0
HPP92_004548 Vanilla planifolia HOM05D005214 ORTHO05D005861 9.9e-36 153.3 98 69.4
Ah.06g189700 Amaranthus hybridus HOM05D005214 ORTHO05D005861 1.3e-35 152.9 100 73.0
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 1.3e-35 152.9 100 71.0
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 1.3e-35 152.9 99 75.8
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 1.7e-35 152.5 100 72.0
Glyma.19G234200 Glycine max HOM05D005214 ORTHO05D005861 1.7e-35 152.5 100 72.0
Medtr7g113170 Medicago truncatula HOM05D005214 ORTHO05D005861 1.7e-35 152.5 96 75.0
Rhsim07G0186700 Rhododendron simsii HOM05D005214 ORTHO05D005861 2.2e-35 152.1 157 54.8
SGA_v2.0_scaffold80G25806 Striga asiatica HOM05D005214 ORTHO05D005861 2.9e-35 151.8 100 73.0
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 3.8e-35 151.4 97 69.1
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 3.8e-35 151.4 100 77.0
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 3.8e-35 151.4 100 72.0
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 3.8e-35 151.4 100 72.0
CANSAT54G2509 Cannabis sativa HOM05D005214 ORTHO05D005861 4.9e-35 151.0 100 68.0
Ca_05806_v3 Cicer arietinum L. HOM05D005214 ORTHO05D005861 6.4e-35 150.6 100 71.0
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 8.4e-35 150.2 100 72.0
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 8.4e-35 150.2 100 72.0
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 1.1e-34 149.8 100 73.0
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 1.1e-34 149.8 100 69.0
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 1.4e-34 149.4 100 72.0
Hma1.2p1_1374F.1_g278890 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 1.9e-34 149.1 100 72.0
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 3.2e-34 148.3 100 72.0
TWI12G0670 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 4.2e-34 147.9 100 70.0
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 9.2e-34 146.7 96 76.0
CSS0021432 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 1.6e-33 146.0 100 71.0
ClCG02G015500 Citrullus lanatus HOM05D005214 ORTHO05D005861 1.6e-33 146.0 100 69.0
Peaxi162Scf00849g00006 Petunia axillaris HOM05D005214 ORTHO05D005861 1.6e-33 146.0 104 69.2
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 2.7e-33 145.2 100 68.0
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 2.7e-33 145.2 100 67.0
FvH4_7g05300 Fragaria vesca HOM05D005214 ORTHO05D005861 2.7e-33 145.2 100 70.0
SalBow3G0885 Salvia bowleyana HOM05D005214 ORTHO05D005861 4.6e-33 144.4 100 66.0
TWI12G0067 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 4.6e-33 144.4 100 66.0
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 6.0e-33 144.1 100 67.0
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 6.0e-33 144.1 100 68.0
FAN03G0660 Fragaria x ananassa HOM05D005214 ORTHO05D005861 7.8e-33 143.7 100 69.0
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 7.8e-33 143.7 101 69.3
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 1.3e-32 142.9 100 66.0
GSVIVG01031122001 Vitis vinifera HOM05D005214 ORTHO05D005861 1.3e-32 142.9 100 67.0
MELO3C004228.2 Cucumis melo HOM05D005214 ORTHO05D005861 1.7e-32 142.5 100 69.0
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 1.7e-32 142.5 100 66.0
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 1.7e-32 142.5 96 72.9
VMungo0540G0352 Vigna mungo HOM05D005214 ORTHO05D005861 2.3e-32 142.1 100 67.0
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 3.0e-32 141.7 100 68.0
Sed0006034 Sechium edule HOM05D005214 ORTHO05D005861 3.0e-32 141.7 100 67.0
CsaV3_2G006580 Cucumis sativus L. HOM05D005214 ORTHO05D005861 5.1e-32 141.0 100 67.0
FAN14G2055 Fragaria x ananassa HOM05D005214 ORTHO05D005861 5.1e-32 141.0 101 68.3
TWI12G0439 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 6.6e-32 140.6 96 69.8
FvH4_6g06410 Fragaria vesca HOM05D005214 ORTHO05D005861 1.5e-31 139.4 101 67.3
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.9e-31 139.0 89 71.9
TWI12G0218 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 3.3e-31 138.3 101 68.3
arahy.Tifrunner.gnm1.ann1.0P9F65 Arachis hypogaea HOM05D005214 ORTHO05D005861 7.3e-31 137.1 100 63.0
SEGI_14490 Sequoiadendron giganteum HOM05D005214 ORTHO05D005861 7.3e-31 137.1 100 61.0
arahy.Tifrunner.gnm1.ann1.P1V9IM Arachis hypogaea HOM05D005214 ORTHO05D005861 9.6e-31 136.7 100 63.0
Aa31LG11G9400 Aethionema arabicum HOM05D005214 ORTHO05D005861 3.1e-29 131.7 107 61.7
FAN17G2752 Fragaria x ananassa HOM05D005214 ORTHO05D005861 5.3e-29 131.0 100 66.0
SMO364G0425 Selaginella moellendorffii HOM05D005214 ORTHO05D005861 3.4e-28 128.3 97 58.8
A06p37390 Brassica napus HOM05D005214 ORTHO05D005861 9.9e-28 126.7 100 62.0
C07p40960 Brassica napus HOM05D005214 ORTHO05D005861 9.9e-28 126.7 100 62.0
BolC7t44627H Brassica oleracea HOM05D005214 ORTHO05D005861 9.9e-28 126.7 100 62.0
BraA06t26663Z Brassica rapa HOM05D005214 ORTHO05D005861 9.9e-28 126.7 100 62.0
Haze_04157 Corylus avellana HOM05D005214 ORTHO05D005861 1.7e-27 125.9 96 62.5
unitig_699.g19247 Utricularia gibba HOM05D005214 ORTHO05D005861 8.4e-27 123.6 100 58.0
Mapoly0047s0084 Marchantia polymorpha HOM05D005214 ORTHO05D005861 9.3e-26 120.2 100 59.0
Thecc.05G311600 Theobroma cacao HOM05D005214 ORTHO05D005861 1.2e-25 119.8 86 67.4
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 3.5e-25 118.2 82 67.1
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 2.5e-23 112.1 100 52.0
Lj9A119G25 Lonicera japonica HOM05D005214 ORTHO05D005861 7.3e-23 110.5 62 82.3
CSS0006401 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 1.6e-22 109.4 87 60.9
Pp3c6_6410 Physcomitrium patens HOM05D005214 ORTHO05D005861 2.0e-20 102.4 100 52.0
PRCOL_00001746 Prasinoderma coloniale HOM05D005214 ORTHO05D005861 4.6e-17 91.3 96 47.9
TWI12G1447 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 7.4e-15 84.0 62 61.3
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 1.2e-12 76.6 82 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3758 Anthoceros agrestis HOM05D005214 ORTHO05D005861 1.3e-11 73.2 89 42.7
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 1.4e-10 69.7 78 47.4
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 1.9e-10 69.3 101 37.6
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 1.9e-10 69.3 101 37.6
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.9e-10 69.3 101 38.6
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 3.2e-10 68.6 81 42.0
Cc00_g02520 Coffea canephora HOM05D005214 ORTHO05D005861 5.5e-10 67.8 70 52.9
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 2.1e-09 65.9 74 48.6
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 3.5e-09 65.1 91 39.6
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 3.5e-09 65.1 79 40.5
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 4.6e-09 64.7 79 45.6
CAN.G497.69 Capsicum annuum HOM05D003495 ORTHO05D004159 6.0e-09 64.3 78 42.3
DCAR_001167 Daucus carota HOM05D006716 ORTHO05D008396 2.3e-08 62.4 82 42.7
Solyc02g082600.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 3.9e-08 61.6 83 42.2
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 5.1e-08 61.2 80 38.8
Ah.10g035300 Amaranthus hybridus HOM05D006716 ORTHO05D008396 8.7e-08 60.5 82 41.5
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 8.7e-08 60.5 99 36.4
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 1.9e-07 59.3 82 34.1
Peaxi162Scf00038g00840 Petunia axillaris HOM05D006716 ORTHO05D008396 3.3e-07 58.5 74 39.2
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 4.3e-07 58.2 66 42.4
Lj6A58T50 Lonicera japonica HOM05D006716 ORTHO05D008396 5.7e-07 57.8 97 36.1
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 5.7e-07 57.8 74 35.1
Sopen02g027300 Solanum pennellii HOM05D006716 ORTHO05D008396 5.7e-07 57.8 78 42.3
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 5.7e-07 57.8 72 44.4
Eucgr.L01166 Eucalyptus grandis HOM05D005214 ORTHO05D005861 7.4e-07 57.4 51 52.9
DCAR_001924 Daucus carota HOM05D006716 ORTHO05D008396 9.6e-07 57.0 99 36.4
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 9.6e-07 57.0 82 39.0
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 1.3e-06 56.6 82 37.8
Eucgr.H04507 Eucalyptus grandis HOM05D005214 ORTHO05D005861 2.1e-06 55.8 51 51.0
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 4.8e-06 54.7 80 40.0
Rhsim01G0092700 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.2e-06 54.3 79 36.7
Rhsim01G0093800 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.2e-06 54.3 79 36.7
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 8.2e-06 53.9 64 42.2
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 8.2e-06 53.9 68 35.3


User provided reference genes

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