Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.3e-165 584.7 323 100.0
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.4e-93 345.5 312 67.9
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.0e-89 334.3 250 76.8
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 6.1e-87 325.1 306 69.3
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.2e-85 320.9 243 74.1
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.0e-85 320.1 315 60.6
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 2.2e-84 316.6 319 65.5
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.8e-83 313.5 313 68.7
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.8e-83 313.5 314 66.6
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 4.1e-83 312.4 254 75.6
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.5e-82 309.3 307 64.8
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.8e-82 308.1 319 68.3
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.3e-81 307.4 320 58.1
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 6.6e-81 305.1 320 67.8
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.2e-79 300.8 322 66.8
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.6e-79 300.4 241 73.4
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 3.6e-79 299.3 322 65.5
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.4e-78 297.4 314 61.1
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.3e-78 296.6 312 64.7
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.0e-78 296.2 312 67.0
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.0e-78 295.8 318 57.2
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 6.8e-78 295.0 296 62.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.4e-77 292.4 311 65.9
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 5.7e-77 292.0 311 65.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.2e-76 290.0 330 66.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.7e-76 289.3 311 65.3
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.4e-76 288.5 311 65.0
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.2e-75 286.2 339 56.6
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 7.0e-75 285.0 319 58.0
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 5.0e-73 278.9 324 56.2
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 6.6e-73 278.5 324 63.6
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 6.6e-73 278.5 248 68.1
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.5e-72 277.3 313 60.1
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-72 277.3 312 58.3
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.9e-72 276.9 317 54.6
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.5e-72 276.6 303 58.4
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.3e-72 275.8 330 56.1
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 5.6e-72 275.4 244 68.4
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-71 274.2 220 70.9
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.6e-71 273.9 317 55.5
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.6e-71 272.7 311 55.0
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 8.0e-71 271.6 301 58.1
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-70 270.4 313 58.8
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 4.0e-70 269.2 311 57.2
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 4.0e-70 269.2 311 57.2
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.2e-70 268.9 316 53.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.8e-70 268.5 313 58.5
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 9.8e-69 264.6 243 65.8
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.3e-68 264.2 327 55.7
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.3e-68 264.2 310 56.1
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.9e-68 263.1 323 57.6
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 6.4e-68 261.9 235 66.4
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 8.3e-68 261.5 249 66.7
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.1e-67 261.2 267 62.9
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 3.2e-67 259.6 247 65.2
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.2e-67 259.6 304 61.8
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 4.1e-67 259.2 248 66.1
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 5.4e-67 258.8 318 54.7
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 7.0e-67 258.5 249 63.5
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.6e-66 257.3 325 56.3
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.7e-66 256.5 311 55.6
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.5e-66 256.1 348 49.4
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.0e-65 254.6 254 63.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.7e-65 253.8 315 54.6
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 3.0e-65 253.1 236 66.1
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.6e-65 251.9 274 61.3
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 6.6e-65 251.9 308 52.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 6.6e-65 251.9 309 54.4
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 3.3e-64 249.6 311 60.8
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.3e-64 249.2 317 54.6
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 4.3e-64 249.2 335 50.1
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 5.6e-64 248.8 306 54.9
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 9.5e-64 248.1 215 67.0
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.2e-63 247.7 345 49.9
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.2e-63 247.7 254 61.0
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.1e-63 246.9 260 61.9
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.1e-63 246.9 259 59.1
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.1e-63 246.9 255 64.3
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.8e-63 246.5 254 61.0
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 2.8e-63 246.5 267 60.7
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 6.2e-63 245.4 249 63.1
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 8.1e-63 245.0 325 55.1
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.3e-62 243.4 314 52.5
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.1e-62 243.0 327 52.0
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 1.2e-61 241.1 315 54.0
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.4e-61 239.6 313 52.4
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 7.5e-61 238.4 307 51.5
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 9.9e-61 238.0 313 53.7
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.7e-60 237.3 319 55.8
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 4.1e-59 232.6 304 53.3
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.1e-59 231.9 303 52.1
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 9.2e-59 231.5 313 49.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.2e-58 231.1 204 66.2
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.2e-58 231.1 250 58.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 3.5e-58 229.6 258 59.7
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 7.8e-58 228.4 290 53.4
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 6.6e-57 225.3 310 54.2
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 4.3e-56 222.6 248 56.5
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 4.7e-55 219.2 181 67.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 4.7e-55 219.2 255 58.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.4e-54 216.9 252 54.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 8.9e-54 214.9 293 50.5
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.8e-53 212.2 325 48.9
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.7e-52 210.7 253 51.4
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.7e-52 210.7 313 47.9
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.9e-51 207.2 323 46.7
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 5.4e-51 205.7 254 55.5
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 9.2e-51 204.9 253 50.2
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.1e-50 203.8 334 45.8
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.6e-50 202.6 258 55.8
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 7.3e-48 195.3 263 53.2
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.3e-48 195.3 267 52.4
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-48 194.9 271 52.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-47 194.5 262 53.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-47 194.1 257 54.1
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.6e-47 194.1 257 54.1
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-47 193.7 249 54.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.1e-47 193.7 262 53.1
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 4.7e-47 192.6 260 53.5
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 6.2e-47 192.2 278 51.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 8.1e-47 191.8 244 54.9
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 8.1e-47 191.8 269 51.7
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-46 191.4 262 52.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.8e-46 190.7 253 54.5
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 4.0e-46 189.5 252 54.4
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 4.0e-46 189.5 339 42.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 3.4e-45 186.4 230 52.2
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 4.4e-45 186.0 256 52.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.8e-45 185.7 306 44.8
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.9e-44 183.3 323 53.6
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.9e-44 183.3 249 50.6
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.9e-44 183.3 238 55.9
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.4e-44 182.2 254 51.6
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 4.2e-43 179.5 265 52.8
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 9.3e-43 178.3 254 51.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.0e-41 174.9 245 51.8
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-41 174.9 245 51.8
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.1e-41 172.6 250 50.0
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-40 171.0 265 50.2
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 4.3e-40 169.5 266 50.4
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.6e-39 167.5 250 52.4
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.1e-39 167.2 261 49.0
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 4.0e-38 162.9 165 60.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-36 156.0 215 51.2
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 8.7e-33 145.2 311 41.8
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-32 144.4 243 49.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.6e-31 141.0 170 51.8
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 6.2e-31 139.0 254 42.9
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 6.2e-31 139.0 254 42.9
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 3.1e-30 136.7 109 73.4
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-29 134.4 254 42.1
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.5e-29 134.4 102 73.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 3.4e-29 133.3 254 42.1
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.8e-29 132.5 222 45.5
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.6e-29 132.1 222 45.5
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 5.5e-27 125.9 216 44.9
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.6e-23 114.4 190 45.8
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 6.2e-23 112.5 185 45.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 8.2e-23 112.1 171 47.4
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 8.2e-23 112.1 174 44.8
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 5.1e-17 92.8 84 57.1
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.1e-14 85.1 66 77.3


User provided reference genes

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