Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 3.6e-68 261.5 140 100.0
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 4.5e-26 121.7 123 57.7
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.0e-22 110.5 127 54.3
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 1.8e-22 109.8 138 52.2
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.1e-21 107.1 134 51.5
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 2.5e-21 105.9 130 52.3
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 2.5e-21 105.9 104 63.5
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 2.8e-20 102.4 104 65.4
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 3.7e-20 102.1 136 50.7
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 8.1e-20 100.9 115 56.5
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 2.4e-19 99.4 126 50.8
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 2.4e-19 99.4 139 47.5
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 6.9e-19 97.8 102 58.8
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 6.9e-19 97.8 128 51.6
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.0e-18 96.3 134 47.8
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 4.5e-18 95.1 130 53.1
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 5.8e-18 94.7 130 53.1
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 5.8e-18 94.7 130 53.1
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 5.8e-18 94.7 135 46.7
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 7.6e-18 94.4 137 46.0
Dinv10120 Davidia involucrata HOM05D006547 ORTHO05D008112 3.8e-17 92.0 107 54.2
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 1.1e-16 90.5 106 54.7
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 5.5e-16 88.2 138 45.7
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 5.5e-16 88.2 123 48.0
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 7.1e-16 87.8 129 50.4
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 7.1e-16 87.8 116 43.1
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 2.1e-15 86.3 110 52.7
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 6.0e-15 84.7 111 53.2
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 6.0e-15 84.7 99 56.6
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 6.0e-15 84.7 80 56.2
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.8e-14 83.2 76 64.5
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 2.3e-14 82.8 122 51.6
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 2.3e-14 82.8 137 46.7
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 3.0e-14 82.4 138 44.2
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 3.9e-14 82.0 102 50.0
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 3.9e-14 82.0 98 52.0
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 3.9e-14 82.0 99 56.6
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 5.1e-14 81.6 124 48.4
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 8.7e-14 80.9 106 47.2
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 8.7e-14 80.9 105 56.2
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 1.1e-13 80.5 118 47.5
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 1.1e-13 80.5 74 59.5
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 1.5e-13 80.1 137 46.7
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 1.9e-13 79.7 108 41.7
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 1.9e-13 79.7 134 39.6
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 2.5e-13 79.3 135 40.0
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 3.3e-13 79.0 60 61.7
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.3e-13 78.6 139 41.7
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 4.3e-13 78.6 77 58.4
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.6e-12 76.6 93 49.5
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 2.8e-12 75.9 85 55.3
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 3.7e-12 75.5 77 53.2
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 3.7e-12 75.5 63 65.1
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 6.3e-12 74.7 91 45.1
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 6.3e-12 74.7 139 41.0
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 6.3e-12 74.7 75 56.0
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.1e-11 73.9 139 41.0
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.4e-11 72.8 91 45.1
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.4e-11 72.8 91 45.1
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 2.4e-11 72.8 91 45.1
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 4.1e-11 72.0 152 38.2
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 5.3e-11 71.6 138 41.3
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 9.0e-11 70.9 91 44.0
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 9.0e-11 70.9 91 44.0
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 9.0e-11 70.9 72 54.2
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.2e-10 70.5 91 44.0
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.2e-10 70.5 142 38.0
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.2e-10 70.5 142 38.0
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 1.2e-10 70.5 91 44.0
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.2e-10 70.5 115 40.0
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 1.5e-10 70.1 73 49.3
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.5e-10 70.1 119 39.5
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.5e-10 70.1 102 47.1
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 1.5e-10 70.1 145 40.0
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 2.0e-10 69.7 134 39.6
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 2.0e-10 69.7 134 41.0
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 2.6e-10 69.3 69 56.5
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 2.6e-10 69.3 91 44.0
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 2.6e-10 69.3 91 44.0
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 2.6e-10 69.3 75 49.3
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 2.6e-10 69.3 102 44.1
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 2.6e-10 69.3 136 39.7
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 3.4e-10 68.9 83 53.0
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 3.4e-10 68.9 91 42.9
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 3.4e-10 68.9 91 42.9
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 3.4e-10 68.9 91 42.9
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 3.4e-10 68.9 91 42.9
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 3.4e-10 68.9 120 39.2
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 4.5e-10 68.6 80 46.2
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 5.9e-10 68.2 69 52.2
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 5.9e-10 68.2 105 47.6
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 1.0e-09 67.4 94 41.5
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.0e-09 67.4 79 48.1
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 1.3e-09 67.0 86 47.7
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 1.7e-09 66.6 91 40.7
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 1.7e-09 66.6 136 38.2
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 2.2e-09 66.2 73 53.4
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 3.8e-09 65.5 80 48.8
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 5.0e-09 65.1 91 40.7
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 6.5e-09 64.7 94 38.3
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 6.5e-09 64.7 94 38.3
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 6.5e-09 64.7 61 55.7
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 8.5e-09 64.3 91 46.2
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 8.5e-09 64.3 134 40.3
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 1.1e-08 63.9 97 46.4
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 1.1e-08 63.9 75 50.7
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 1.4e-08 63.5 46 69.6
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 1.4e-08 63.5 117 43.6
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 1.9e-08 63.2 117 43.6
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 9.3e-08 60.8 87 46.0
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 2.7e-07 59.3 95 40.0
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 2.7e-07 59.3 121 35.5
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 3.6e-07 58.9 91 42.9
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 4.6e-07 58.5 89 43.8
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 7.9e-07 57.8 77 42.9
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 2.3e-06 56.2 72 40.3
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 3.0e-06 55.8 54 55.6
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 3.0e-06 55.8 124 37.1
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 5.1e-06 55.1 65 43.1
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 5.1e-06 55.1 65 47.7


User provided reference genes

Program Settings