Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 3.3e-198 694.9 361 100.0
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 5.6e-113 411.8 368 62.5
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 2.3e-103 379.8 408 56.9
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 6.6e-82 308.5 390 49.2
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 2.8e-80 303.1 372 50.8
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 1.2e-78 297.7 381 49.9
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 4.5e-78 295.8 371 51.5
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 2.9e-77 293.1 231 65.8
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 4.9e-77 292.4 381 47.5
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 2.7e-75 286.6 382 47.9
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 5.6e-73 278.9 287 54.4
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 3.6e-72 276.2 517 39.3
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 9.9e-70 268.1 379 44.3
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 9.9e-70 268.1 263 54.0
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.7e-67 260.0 398 44.2
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.3e-66 257.7 283 51.9
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 1.3e-66 257.7 266 54.1
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.8e-66 257.3 262 55.3
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 3.0e-66 256.5 378 45.2
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 3.9e-66 256.1 383 44.6
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 1.5e-65 254.2 377 45.1
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 2.5e-65 253.4 230 57.0
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.6e-65 252.3 374 44.1
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.6e-65 252.3 377 44.8
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.6e-65 252.3 377 44.8
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 7.4e-65 251.9 390 45.4
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 7.4e-65 251.9 250 59.6
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 4.8e-64 249.2 377 44.8
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.1e-63 248.1 384 44.0
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 1.4e-63 247.7 333 47.1
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 2.0e-62 243.8 370 43.5
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 1.7e-61 240.7 376 42.3
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.7e-61 240.7 359 42.9
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.7e-61 240.7 375 41.6
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 2.9e-61 240.0 375 41.9
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.9e-61 240.0 271 52.0
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 4.9e-61 239.2 366 44.5
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 3.2e-60 236.5 209 59.3
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 5.5e-60 235.7 276 51.4
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 2.3e-58 230.3 366 44.0
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 3.9e-58 229.6 380 39.2
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 4.3e-57 226.1 380 43.2
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 7.4e-57 225.3 284 47.2
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 2.1e-56 223.8 395 40.5
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 3.1e-55 219.9 380 40.8
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.2e-54 218.0 262 45.4
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 2.0e-54 217.2 262 45.0
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 4.5e-54 216.1 386 37.0
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 6.5e-53 212.2 262 44.3
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 3.2e-52 209.9 368 41.8
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 4.2e-52 209.5 375 39.2
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.2e-51 208.0 247 46.6
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 1.6e-51 207.6 206 53.4
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 3.9e-50 203.0 267 47.2
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 6.7e-50 202.2 320 41.6
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 5.7e-49 199.1 408 37.7
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 7.4e-49 198.7 235 55.3
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 2.2e-48 197.2 402 39.1
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 2.8e-48 196.8 403 38.5
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 4.8e-48 196.1 252 44.8
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 6.9e-47 192.2 311 43.4
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.0e-45 188.3 365 36.4
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.0e-45 188.3 386 37.8
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 1.7e-45 187.6 292 44.5
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 3.8e-45 186.4 373 38.9
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 6.5e-45 185.7 374 37.2
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 2.5e-44 183.7 382 40.3
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 5.5e-44 182.6 372 39.5
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 1.6e-43 181.0 387 38.0
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 3.3e-41 173.3 380 36.1
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 4.4e-41 172.9 161 54.7
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 5.7e-41 172.6 295 41.7
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 5.7e-41 172.6 388 38.4
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 3.7e-40 169.9 302 41.1
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 5.3e-39 166.0 330 36.4
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 1.5e-38 164.5 323 37.8
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 2.0e-38 164.1 317 38.8
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 2.6e-38 163.7 184 48.4
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 5.9e-38 162.5 363 35.5
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 1.3e-37 161.4 157 53.5
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 1.9e-36 157.5 324 36.7
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 6.1e-35 152.5 314 36.6
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 2.3e-34 150.6 318 37.4
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 2.3e-34 150.6 319 37.0
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 3.9e-34 149.8 374 35.0
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 3.9e-34 149.8 374 35.0
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 6.7e-34 149.1 374 34.2
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 2.1e-27 127.5 341 33.7
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.2e-20 103.6 219 38.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 4.8e-16 89.7 198 33.3
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.1e-15 88.6 301 28.6
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.8e-15 87.8 228 29.4
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 5.4e-15 86.3 219 33.8
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 5.4e-15 86.3 78 56.4
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 7.0e-15 85.9 261 28.7
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 7.0e-15 85.9 319 27.9
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.5e-14 83.6 267 33.0
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 4.5e-14 83.2 247 28.7
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 5.9e-14 82.8 282 28.0
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.7e-13 81.3 245 29.8
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.9e-13 80.5 238 29.8
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 5.0e-13 79.7 278 26.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 5.0e-13 79.7 221 29.0
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 2.5e-12 77.4 226 30.1
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 5.5e-12 76.3 240 26.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 5.5e-12 76.3 227 29.5
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 9.5e-12 75.5 227 28.2
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 3.6e-11 73.6 277 25.3
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.6e-11 73.6 221 26.2
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.6e-11 73.6 348 23.6
Pp3c14_2620 Physcomitrium patens HOM05D029953 ORTHO05D009567 6.1e-11 72.8 246 30.1
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.0e-10 72.0 224 27.2
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.8e-10 71.2 227 25.6
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 4.0e-10 70.1 258 27.1
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 4.0e-10 70.1 224 25.9
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 2.6e-09 67.4 212 30.2
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 2.6e-09 67.4 299 26.4
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.4e-09 67.0 353 25.2
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 9.8e-09 65.5 223 28.3
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 2.2e-08 64.3 342 27.2
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.4e-07 61.6 277 23.5
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.8e-07 61.2 261 26.8
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.8e-07 61.2 260 27.3
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 7.0e-07 59.3 363 25.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.2e-06 58.5 324 24.7
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.2e-06 58.5 188 28.7
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.6e-06 58.2 310 23.5
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 2.0e-06 57.8 141 31.2
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.9e-06 56.2 345 26.4


User provided reference genes

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