Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-176 622.5 317 100.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-158 562.8 290 99.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.8e-131 471.1 258 94.2
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.6e-111 405.2 271 76.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 3.4e-106 389.0 272 75.4
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.9e-105 386.0 263 74.5
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 6.0e-103 378.3 272 74.3
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 7.8e-103 377.9 298 68.5
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.4e-98 362.1 242 77.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.9e-97 358.6 265 67.9
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.9e-96 356.7 264 69.3
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 5.1e-94 348.6 264 70.5
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-93 347.4 232 77.6
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.5e-93 346.3 276 64.9
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 3.3e-93 345.9 275 65.5
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.2e-92 341.7 262 68.3
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.5e-90 337.0 263 66.2
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 2.0e-90 336.7 260 66.9
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.0e-90 336.7 263 66.5
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-90 335.9 260 66.9
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-90 335.9 260 66.9
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-90 335.9 260 66.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 7.6e-90 334.7 261 64.8
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.9e-89 332.8 263 65.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.4e-88 330.5 264 64.8
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.4e-88 329.7 257 66.1
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 3.2e-88 329.3 259 64.9
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.6e-87 327.0 271 63.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.0e-86 324.3 266 63.5
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.8e-86 323.6 262 64.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.9e-86 322.4 230 73.9
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.5e-85 320.5 260 63.1
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.3e-85 318.9 264 64.4
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 4.3e-85 318.9 262 61.5
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 5.6e-85 318.5 271 60.9
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 5.6e-85 318.5 258 64.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.1e-84 316.6 262 61.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 3.1e-83 312.8 277 60.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 6.9e-83 311.6 270 60.4
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.9e-83 311.6 266 62.0
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.5e-82 310.5 264 62.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.5e-82 310.5 266 61.3
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 4.5e-82 308.9 259 63.3
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.8e-82 308.5 211 81.0
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 5.8e-82 308.5 270 60.4
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 7.6e-82 308.1 278 59.0
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.3e-81 307.4 262 61.1
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.3e-81 307.4 257 64.6
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.7e-81 307.0 267 60.3
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.8e-81 305.8 263 59.7
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 6.4e-81 305.1 280 55.7
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.4e-80 303.1 263 60.1
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.2e-80 302.4 276 59.4
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 2.1e-79 300.1 273 57.5
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.1e-79 300.1 274 57.7
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.3e-78 296.6 261 62.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.1e-78 295.4 266 59.4
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.1e-77 294.3 260 61.2
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.5e-77 293.9 260 60.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 9.6e-77 291.2 264 57.6
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.6e-76 290.4 264 60.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 6.9e-75 285.0 255 60.0
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-74 284.3 266 56.4
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.8e-74 282.0 266 55.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.6e-74 281.6 262 56.1
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.0e-73 281.2 266 55.3
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 4.9e-73 278.9 265 55.8
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.4e-73 278.1 262 54.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.4e-72 277.3 262 55.7
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.5e-71 272.7 260 57.3
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 7.9e-71 271.6 261 58.6
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.3e-69 266.2 271 52.0
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 4.3e-69 265.8 261 55.2
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 9.6e-69 264.6 241 59.3
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.8e-68 263.1 254 55.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.1e-67 259.6 262 53.1
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 4.1e-67 259.2 259 55.2
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 4.1e-67 259.2 263 53.6
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.1e-67 259.2 276 51.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.6e-66 256.5 262 54.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 7.6e-66 255.0 254 55.1
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.5e-64 250.0 260 52.3
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.2e-64 249.6 174 69.0
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 7.2e-64 248.4 260 55.4
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.2e-63 247.7 259 55.6
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.0e-62 244.6 256 50.8
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.8e-62 243.8 262 53.4
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.1e-62 242.3 205 61.5
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.1e-61 241.1 260 52.7
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.7e-61 238.8 273 49.1
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.7e-61 238.8 283 48.4
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 9.7e-61 238.0 263 51.7
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 9.7e-61 238.0 263 51.7
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.7e-61 238.0 205 60.5
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.8e-60 236.5 256 50.8
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.8e-60 236.5 268 51.1
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.3e-60 235.3 266 49.2
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.1e-59 234.6 271 49.4
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.1e-59 234.6 260 52.7
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.4e-59 234.2 177 64.4
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.8e-59 233.8 256 50.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 9.1e-59 231.5 258 51.6
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 9.1e-59 231.5 256 50.8
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.2e-58 231.1 261 52.9
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.2e-58 231.1 259 49.0
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.2e-58 231.1 259 51.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 2.6e-58 229.9 268 51.5
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 4.5e-58 229.2 261 52.1
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 5.9e-58 228.8 262 50.4
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.2e-57 226.9 254 47.6
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.2e-57 226.9 261 49.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 5.0e-57 225.7 263 50.2
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 6.5e-57 225.3 270 48.9
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.5e-56 223.4 257 51.4
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 4.2e-56 222.6 259 48.6
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 5.5e-56 222.2 270 47.8
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.2e-55 221.1 260 53.5
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 6.1e-55 218.8 271 47.6
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 6.1e-55 218.8 258 50.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 7.9e-55 218.4 259 50.2
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.4e-54 217.6 170 65.9
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.3e-54 216.9 270 47.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.3e-54 216.9 270 47.8
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 5.1e-54 215.7 178 59.6
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 8.8e-54 214.9 178 59.6
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 8.8e-54 214.9 178 59.6
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 5.7e-53 212.2 264 48.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.2e-52 210.3 220 50.9
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.3e-52 208.8 266 46.2
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.4e-51 206.8 178 57.3
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 4.1e-51 206.1 270 45.6
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.2e-49 200.3 263 43.7
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.8e-49 199.5 261 45.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 5.5e-48 195.7 169 55.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.2e-47 194.5 274 43.4
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.6e-47 194.1 170 57.1
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 4.4e-45 186.0 255 43.5
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-44 184.1 105 88.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.4e-43 181.0 264 42.4
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.8e-43 180.6 174 55.7
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.1e-43 179.9 116 73.3
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.1e-43 179.5 117 73.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.2e-42 177.9 273 42.9
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.5e-40 171.0 150 56.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 5.5e-40 169.1 159 57.2
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.6e-39 167.5 154 55.2
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.1e-35 151.8 131 55.7
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 2.4e-27 127.1 124 50.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.5e-26 123.2 132 46.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.9e-24 117.5 82 70.7
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 5.2e-22 109.4 256 32.0
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.5e-16 91.3 70 62.9
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 4.3e-16 89.7 163 35.6
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.8e-15 87.0 95 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 4.0e-14 83.2 90 40.0
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 4.4e-13 79.7 194 29.4
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 5.7e-13 79.3 131 31.3
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 4.3e-08 63.2 273 27.1
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-06 57.0 93 32.3


User provided reference genes

Program Settings