Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011723 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1478.8 724 100.0
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1316.2 738 90.5
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1316.2 738 90.5
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1265.8 740 86.9
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1230.7 740 84.7
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1226.8 740 83.8
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 0.0e+00 1226.5 739 84.3
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1223.8 743 83.4
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1222.6 740 83.8
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 1222.6 740 83.6
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1221.8 740 83.5
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1221.5 740 83.5
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 0.0e+00 1218.4 740 83.5
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1214.1 740 83.2
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 0.0e+00 1213.4 739 83.4
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1204.5 740 82.3
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1200.7 719 84.6
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 0.0e+00 1198.7 740 82.3
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 0.0e+00 1194.1 741 82.1
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 1192.2 739 81.9
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 0.0e+00 1190.6 742 81.9
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1189.1 777 78.9
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 0.0e+00 1186.8 744 81.2
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1184.9 740 81.1
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 0.0e+00 1182.9 740 81.4
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1181.4 739 81.2
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 0.0e+00 1180.2 741 80.6
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 0.0e+00 1179.9 741 80.8
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 0.0e+00 1179.5 740 81.5
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1176.4 720 83.1
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 0.0e+00 1175.6 740 80.7
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 0.0e+00 1175.2 741 80.7
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 0.0e+00 1173.7 740 80.5
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 0.0e+00 1171.4 741 81.0
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1170.6 741 80.8
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 0.0e+00 1170.2 747 79.8
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 0.0e+00 1169.1 740 79.9
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1169.1 740 80.4
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 0.0e+00 1169.1 740 80.5
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 1167.9 741 80.6
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1167.5 741 80.4
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 0.0e+00 1167.1 741 80.3
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1167.1 739 80.4
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1166.0 741 80.4
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1164.4 741 80.0
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1162.9 740 79.9
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1162.9 741 79.9
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1162.5 741 79.9
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1159.8 741 80.2
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 0.0e+00 1158.3 742 80.2
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 0.0e+00 1157.5 741 80.0
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1157.5 741 79.8
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1157.1 747 79.3
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 0.0e+00 1156.4 904 68.7
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1153.7 741 79.5
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 0.0e+00 1153.3 741 79.4
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1151.0 741 78.7
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 0.0e+00 1149.4 741 78.8
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1149.0 763 77.3
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 0.0e+00 1148.3 741 78.8
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 0.0e+00 1147.9 741 79.5
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1147.5 741 79.2
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 1146.7 769 77.2
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1146.0 741 78.4
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1145.6 740 79.7
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1145.6 741 79.2
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 0.0e+00 1145.2 767 76.7
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 0.0e+00 1144.8 743 79.1
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1144.4 741 79.4
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1144.0 748 78.2
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 0.0e+00 1137.5 741 78.7
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1135.2 772 76.2
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1135.2 740 79.1
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1134.8 741 78.0
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1132.1 744 78.0
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 0.0e+00 1130.2 732 79.5
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1129.0 741 77.5
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 0.0e+00 1128.2 741 77.9
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 0.0e+00 1127.5 741 77.9
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 0.0e+00 1127.5 741 77.6
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 0.0e+00 1126.7 741 77.7
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 0.0e+00 1125.9 729 79.4
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 0.0e+00 1124.8 746 77.9
VMungo0464G0617 Vigna mungo HOM05D003495 ORTHO05D004159 0.0e+00 1124.8 777 75.8
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 0.0e+00 1124.4 741 77.6
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1124.0 741 77.1
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1121.3 741 77.1
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 1118.6 741 77.2
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 0.0e+00 1117.8 755 76.4
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1095.5 740 77.0
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 0.0e+00 1086.6 740 76.2
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1083.2 741 74.5
unitig_748.g7268 Utricularia gibba HOM05D003495 ORTHO05D004159 0.0e+00 1080.9 756 73.3
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 0.0e+00 1076.2 743 74.2
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 5.0e-312 1073.5 749 74.2
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 1.7e-310 1068.9 726 76.4
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 4.3e-306 1054.3 640 84.8
HPP92_025566 Vanilla planifolia HOM05D003495 ORTHO05D004159 3.3e-298 1028.1 742 72.0
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 6.2e-297 1023.8 741 70.2
Os02g0830801 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 1.5e-295 1019.2 741 70.2
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.7e-294 1015.8 745 72.6
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 5.3e-288 994.2 742 67.8
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 2.6e-287 991.9 737 67.8
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 5.4e-285 984.2 724 71.8
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 2.7e-284 981.9 738 68.7
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 1.0e-283 979.9 604 82.5
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 5.3e-280 967.6 648 77.3
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 2.0e-271 939.1 683 72.8
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 1.9e-269 932.6 645 74.1
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 6.1e-268 927.5 645 73.5
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 7.2e-261 904.0 592 76.9
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 7.2e-261 904.0 790 61.1
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 2.1e-260 902.5 592 76.7
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 4.6e-260 901.4 592 76.7
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 4.6e-260 901.4 592 76.7
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 9.1e-256 887.1 742 65.0
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 9.1e-256 887.1 740 61.6
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 7.0e-248 860.9 613 72.3
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 1.2e-247 860.1 613 71.8
Actinidia36276 Actinidia chinensis HOM05D003495 ORTHO05D004159 6.5e-238 827.8 477 87.0
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 3.7e-233 812.0 763 60.7
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 4.8e-233 811.6 692 63.4
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 7.5e-226 787.7 781 55.1
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 3.7e-225 785.4 775 55.0
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 9.1e-224 780.8 789 55.4
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 1.3e-214 750.4 730 54.9
Nitab4.5_0000154g0080 Nicotiana tabacum HOM05D003495 ORTHO05D004159 4.4e-194 682.2 464 76.9
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 6.4e-193 678.3 427 80.3
Hma1.2p1_2186F.1_g316380 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 6.6e-174 615.1 455 72.3
Hund20736 Selenicereus undatus HOM05D003495 ORTHO05D004159 2.1e-167 593.6 434 71.2
CiPaw.03G081200 Carya illinoinensis HOM05D003495 ORTHO05D004159 7.1e-160 568.5 349 81.4
COL.COLO4_24184 Corchorus olitorius HOM05D003495 ORTHO05D004159 7.4e-157 558.5 380 77.1
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 2.1e-156 557.0 851 39.4
Actinidia36277 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.2e-79 302.0 177 86.4
SHI33618 Sapria himalayana HOM05D003495 ORTHO05D004159 5.8e-69 266.5 336 47.3
Lj4A126T67 Lonicera japonica HOM05D003495 ORTHO05D004159 1.8e-62 245.0 128 93.0
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.8e-55 221.1 130 83.1
QL02p063603 Quercus lobata HOM05D003495 ORTHO05D004159 1.8e-49 201.8 101 94.1
Hund20737 Selenicereus undatus HOM05D003495 ORTHO05D004159 8.7e-49 199.5 123 76.4
vmacro05604 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.4e-46 192.2 117 82.1
Haze_14359 Corylus avellana HOM05D003495 ORTHO05D004159 1.0e-41 176.0 149 63.1
Psat5g191680 Pisum sativum HOM05D003495 ORTHO05D004159 2.3e-41 174.9 131 71.8
CAN.G497.67 Capsicum annuum HOM05D003495 ORTHO05D004159 3.3e-40 171.0 105 78.1
Oeu032838.1 Olea europaea HOM05D003495 ORTHO05D004159 8.2e-39 166.4 80 97.5
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 2.5e-32 144.8 429 27.5
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 9.7e-32 142.9 265 40.0
CSS0017914 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 1.1e-27 129.4 66 87.9
CSS0034486 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 1.1e-27 129.4 66 89.4
Psat1g055400 Pisum sativum HOM05D003495 ORTHO05D004159 3.0e-25 121.3 89 66.3
CAN.G497.59 Capsicum annuum HOM05D003495 ORTHO05D004159 6.7e-25 120.2 72 80.6
SEGI_02656 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.3e-20 105.9 56 91.1
HanXRQChr17g0549821 Helianthus annuus HOM05D003495 ORTHO05D004159 9.4e-19 99.8 78 73.1
Lsat_1_v5_gn_4_36641 Lactuca sativa HOM05D001412 ORTHO05D002473 2.6e-16 91.7 53 79.2
CSS0030310 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 7.4e-16 90.1 43 90.7
SHI33612 Sapria himalayana HOM05D003495 ORTHO05D004159 1.7e-15 89.0 66 68.2
COL.COLO4_24181 Corchorus olitorius HOM05D003495 ORTHO05D004159 3.1e-14 84.7 41 97.6
BraA02t05288Z Brassica rapa HOM05D003495 ORTHO05D004159 1.2e-13 82.8 40 95.0
PGSC0003DMG400025596 Solanum tuberosum HOM05D000072 ORTHO05D002334 1.2e-13 82.8 40 97.5
PGSC0003DMG400019864 Solanum tuberosum HOM05D003495 ORTHO05D004159 7.7e-13 80.1 40 92.5
A03p07300 Brassica napus HOM05D003495 ORTHO05D004159 2.2e-12 78.6 40 87.5
C03p08370 Brassica napus HOM05D003495 ORTHO05D004159 2.2e-12 78.6 40 87.5
BolC3t13344H Brassica oleracea HOM05D003495 ORTHO05D004159 2.2e-12 78.6 40 87.5
BraA03t10053Z Brassica rapa HOM05D003495 ORTHO05D004159 2.2e-12 78.6 40 87.5
arahy.Tifrunner.gnm1.ann1.7VHQ3C Arachis hypogaea HOM05D000394 ORTHO05D013471 1.9e-11 75.5 62 71.0
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 3.3e-08 64.7 133 33.8
Prupe.3G143100 Prunus persica HOM05D000001 ORTHO05D000003 2.8e-07 61.6 35 80.0


User provided reference genes

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