Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011716 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 9.5e-40 166.4 84 100.0
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.7e-36 155.6 101 83.2
CSS0020995 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 3.4e-21 104.8 62 85.5
CSS0005777 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.8e-13 77.4 74 64.9
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 3.8e-12 74.7 50 80.0
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 7.8e-10 67.0 76 53.9
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 7.8e-10 67.0 76 53.9
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.3e-09 66.2 78 55.1
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 1.7e-09 65.9 83 48.2
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.6e-09 63.9 46 71.7
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 8.7e-09 63.5 57 57.9
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 1.9e-08 62.4 39 79.5
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 1.9e-08 62.4 88 43.2
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 2.5e-08 62.0 77 48.1
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 3.3e-08 61.6 91 42.9
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 5.6e-08 60.8 51 58.8
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 5.6e-08 60.8 79 48.1
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 7.3e-08 60.5 91 41.8
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 9.6e-08 60.1 78 47.4
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.6e-08 60.1 78 47.4
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.6e-08 60.1 78 47.4
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.6e-08 60.1 78 47.4
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 1.2e-07 59.7 39 71.8
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 1.2e-07 59.7 39 71.8
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 1.6e-07 59.3 58 50.0
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 1.6e-07 59.3 76 47.4
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 1.6e-07 59.3 92 41.3
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 2.1e-07 58.9 92 41.3
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.1e-07 58.9 74 47.3
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 2.1e-07 58.9 45 64.4
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 3.6e-07 58.2 88 40.9
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 3.6e-07 58.2 39 71.8
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 3.6e-07 58.2 39 71.8
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 3.6e-07 58.2 39 71.8
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 3.6e-07 58.2 39 71.8
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 4.7e-07 57.8 88 40.9
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 4.7e-07 57.8 49 57.1
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 6.2e-07 57.4 92 40.2
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 6.2e-07 57.4 45 62.2
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 6.2e-07 57.4 76 46.1
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 6.2e-07 57.4 39 71.8
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 6.2e-07 57.4 46 60.9
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 6.2e-07 57.4 31 87.1
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 1.1e-06 56.6 45 62.2
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 1.1e-06 56.6 92 40.2
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 1.1e-06 56.6 33 81.8
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 1.1e-06 56.6 46 58.7
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 1.4e-06 56.2 33 78.8
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 1.4e-06 56.2 33 78.8
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 2.4e-06 55.5 79 41.8
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 2.4e-06 55.5 76 46.1
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 2.4e-06 55.5 46 58.7
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 3.1e-06 55.1 51 56.9
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 4.0e-06 54.7 33 72.7
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 5.2e-06 54.3 33 75.8
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 5.2e-06 54.3 51 56.9
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 5.2e-06 54.3 33 75.8
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 5.2e-06 54.3 45 57.8
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 6.9e-06 53.9 33 75.8
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 6.9e-06 53.9 30 80.0
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 9.0e-06 53.5 33 72.7
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 9.0e-06 53.5 33 75.8


User provided reference genes

Program Settings