Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 4.3e-248 860.9 451 100.0
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 6.8e-177 624.4 445 74.2
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 2.0e-176 622.9 437 74.8
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 2.0e-168 596.3 446 71.7
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.8e-161 573.2 427 72.1
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 3.5e-149 532.3 444 64.2
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 8.4e-143 511.1 441 63.3
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 1.9e-139 500.0 440 60.9
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 4.3e-139 498.8 411 64.5
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 8.2e-138 494.6 434 62.2
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 8.2e-138 494.6 436 60.8
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 8.2e-138 494.6 436 60.8
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 1.5e-136 490.3 444 59.7
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 4.5e-136 488.8 441 61.5
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 7.6e-136 488.0 442 59.5
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.7e-135 486.9 431 60.3
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.1e-134 484.2 428 60.3
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.1e-134 484.2 438 61.0
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 2.5e-134 483.0 440 59.8
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 4.2e-134 482.3 411 62.5
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 4.6e-133 478.8 410 63.2
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 6.0e-133 478.4 428 58.2
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.8e-132 476.9 440 59.5
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 3.9e-132 475.7 444 58.3
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 6.7e-132 474.9 444 57.2
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 5.7e-131 471.9 444 57.9
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 7.4e-131 471.5 411 59.6
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 9.7e-131 471.1 444 56.5
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 3.7e-130 469.2 414 59.7
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 4.8e-130 468.8 417 61.2
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.4e-129 467.2 408 60.5
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 2.4e-129 466.5 410 59.5
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 2.4e-129 466.5 410 60.2
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.5e-128 463.8 438 57.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 3.4e-128 462.6 446 57.4
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 5.5e-126 455.3 448 55.1
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 1.2e-125 454.1 475 54.5
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 2.7e-125 453.0 440 54.8
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.1e-123 447.6 402 58.5
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 1.5e-123 447.2 399 58.6
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 1.7e-122 443.7 435 54.7
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 2.8e-122 443.0 440 55.2
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 3.7e-122 442.6 373 61.4
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 3.7e-122 442.6 416 57.9
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 6.3e-122 441.8 444 55.0
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 2.4e-121 439.9 440 53.0
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 4.1e-121 439.1 441 55.1
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 5.3e-121 438.7 409 58.4
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 6.9e-121 438.3 407 55.8
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 9.1e-121 438.0 441 55.1
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 1.2e-120 437.6 443 54.9
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 2.0e-120 436.8 445 53.5
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 2.6e-120 436.4 410 56.1
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 7.7e-120 434.9 410 54.9
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.3e-119 434.1 404 56.2
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.7e-119 433.7 402 55.7
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 6.5e-119 431.8 436 53.7
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 1.9e-118 430.3 402 55.2
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.5e-118 429.9 390 56.4
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.2e-117 427.6 440 51.8
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.0e-116 424.5 441 52.8
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 1.8e-116 423.7 415 54.7
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 8.8e-116 421.4 448 52.7
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.5e-115 420.6 448 52.7
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 3.3e-115 419.5 406 56.7
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.7e-114 417.2 413 54.0
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 4.8e-114 415.6 420 55.0
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 1.8e-113 413.7 447 51.5
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.0e-111 407.9 446 50.4
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 2.2e-111 406.8 441 53.3
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 5.0e-111 405.6 446 50.4
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 5.5e-110 402.1 473 48.8
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 7.2e-110 401.7 440 50.5
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 2.3e-108 396.7 439 49.7
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 2.0e-107 393.7 395 54.7
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 9.7e-107 391.3 446 49.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.8e-106 389.8 441 49.7
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 6.3e-106 388.7 366 54.1
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 5.3e-105 385.6 348 58.3
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 2.0e-104 383.6 428 49.1
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.3e-103 380.9 454 48.9
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 4.2e-102 375.9 298 63.4
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 9.4e-102 374.8 360 60.0
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 5.7e-99 365.5 438 46.8
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 3.1e-97 359.8 430 47.2
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.2e-93 347.8 365 52.1
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 4.7e-93 345.9 444 46.6
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 7.5e-91 338.6 302 62.9
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 1.3e-90 337.8 360 56.1
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 2.0e-88 330.5 356 55.6
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 3.3e-86 323.2 349 53.6
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 7.8e-80 302.0 448 43.3
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 7.0e-73 278.9 449 36.5
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 9.5e-70 268.5 401 38.7
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 9.2e-65 251.9 210 57.1
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 7.8e-64 248.8 240 53.8
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 4.3e-62 243.0 365 39.5
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 5.6e-62 242.7 404 34.9
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 1.1e-60 238.4 197 57.4
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 1.2e-59 235.0 385 36.1
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 6.4e-50 202.6 214 55.6
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 2.7e-40 170.6 206 46.1
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.5e-30 137.5 91 67.0
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.5e-17 93.2 121 45.5
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 9.3e-17 92.4 73 56.2
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.1e-16 89.7 56 62.5
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.0e-15 87.4 62 59.7
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 2.8e-13 80.9 261 27.6
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.5e-11 75.1 116 41.4
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.0e-11 74.7 101 47.5
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 6.1e-08 63.2 98 41.8
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.5e-06 58.5 40 60.0


User provided reference genes

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