Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.1e-98 363.2 175 100.0
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.0e-51 207.2 143 70.6
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 2.2e-51 206.1 143 71.3
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 2.1e-49 199.5 143 70.6
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.6e-47 192.6 98 99.0
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.9e-42 176.4 144 66.0
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 5.6e-42 174.9 179 55.9
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 1.7e-38 163.3 129 61.2
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 6.4e-38 161.4 167 54.5
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 4.1e-37 158.7 142 57.7
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 7.0e-37 157.9 129 60.5
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 1.6e-36 156.8 139 56.8
CSS0016869 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.7e-35 153.3 110 71.8
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 2.1e-33 146.4 132 53.8
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 6.2e-33 144.8 135 51.9
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 6.8e-32 141.4 138 54.3
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 2.6e-31 139.4 141 51.1
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 3.4e-31 139.0 146 50.7
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 4.4e-31 138.7 149 47.0
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 5.8e-31 138.3 141 50.4
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 2.9e-30 136.0 120 55.8
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 2.9e-30 136.0 149 49.0
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 3.7e-30 135.6 151 48.3
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 4.9e-30 135.2 145 49.7
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 1.1e-29 134.0 140 49.3
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 1.4e-29 133.7 149 45.6
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 5.4e-29 131.7 149 47.7
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 5.4e-29 131.7 126 50.8
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 5.4e-29 131.7 125 56.0
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 7.0e-29 131.3 140 48.6
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 9.2e-29 131.0 149 45.0
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 2.7e-28 129.4 128 50.8
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 3.5e-28 129.0 149 46.3
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 6.0e-28 128.3 148 48.0
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 6.0e-28 128.3 146 48.6
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 6.0e-28 128.3 132 55.3
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 7.8e-28 127.9 142 49.3
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 1.0e-27 127.5 157 46.5
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 2.3e-27 126.3 146 48.6
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.3e-27 126.3 158 44.3
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 1.5e-26 123.6 142 48.6
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.3e-26 122.5 126 49.2
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 5.6e-26 121.7 137 46.7
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.6e-25 120.2 128 46.9
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 2.1e-25 119.8 121 50.4
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 2.8e-25 119.4 120 53.3
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.6e-25 119.0 124 48.4
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.6e-25 119.0 124 48.4
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 4.7e-25 118.6 126 48.4
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 6.2e-25 118.2 120 52.5
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 8.1e-25 117.9 149 45.6
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 5.2e-24 115.2 128 49.2
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 1.2e-23 114.0 176 40.3
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.5e-23 113.6 120 50.0
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 2.6e-23 112.8 123 48.0
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 3.4e-23 112.5 128 50.8
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 5.8e-23 111.7 145 42.8
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 5.8e-23 111.7 142 46.5
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 9.8e-23 110.9 124 49.2
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 9.8e-23 110.9 142 44.4
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 1.3e-22 110.5 174 39.1
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 1.7e-22 110.2 167 40.7
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 1.7e-22 110.2 147 46.3
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.9e-22 109.4 147 45.6
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.9e-22 109.4 149 39.6
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 3.7e-22 109.0 147 45.6
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 3.7e-22 109.0 120 50.0
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 4.9e-22 108.6 134 41.8
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 6.4e-22 108.2 135 43.0
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 8.3e-22 107.8 147 44.9
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 8.3e-22 107.8 147 44.9
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 8.3e-22 107.8 147 44.9
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 8.3e-22 107.8 130 46.2
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 1.1e-21 107.5 167 40.1
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.1e-21 107.5 118 45.8
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 1.1e-21 107.5 123 46.3
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.9e-21 106.7 123 48.8
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.4e-21 106.3 126 43.7
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 4.1e-21 105.5 149 44.3
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 5.4e-21 105.1 149 38.9
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 9.2e-21 104.4 136 44.9
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 9.2e-21 104.4 140 40.0
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 9.2e-21 104.4 150 42.0
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 9.2e-21 104.4 134 43.3
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 1.2e-20 104.0 123 46.3
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 1.2e-20 104.0 126 45.2
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 2.1e-20 103.2 123 45.5
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 2.1e-20 103.2 146 43.2
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 3.5e-20 102.4 134 39.6
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 3.5e-20 102.4 121 46.3
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 4.6e-20 102.1 122 48.4
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 4.6e-20 102.1 123 46.3
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 6.0e-20 101.7 138 41.3
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 6.0e-20 101.7 130 44.6
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 7.8e-20 101.3 126 46.8
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 7.8e-20 101.3 122 48.4
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 1.0e-19 100.9 128 41.4
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 1.3e-19 100.5 136 44.1
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.3e-19 100.5 119 47.1
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 3.0e-19 99.4 123 45.5
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 3.0e-19 99.4 121 46.3
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 3.9e-19 99.0 143 39.2
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 6.6e-19 98.2 130 42.3
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 6.6e-19 98.2 147 41.5
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 1.1e-18 97.4 118 45.8
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.5e-18 97.1 137 41.6
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 1.9e-18 96.7 121 43.0
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 3.3e-18 95.9 128 43.8
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 3.3e-18 95.9 125 41.6
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 5.6e-18 95.1 124 43.5
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 7.3e-18 94.7 118 44.9
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 9.5e-18 94.4 127 39.4
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.2e-17 94.0 138 41.3
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 2.1e-17 93.2 119 44.5
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 2.8e-17 92.8 138 40.6
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.1e-16 90.9 136 39.0
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 1.1e-16 90.9 98 52.0
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 1.4e-16 90.5 176 33.0
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 2.3e-16 89.7 124 41.9
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 1.5e-15 87.0 97 49.5
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 1.7e-14 83.6 120 41.7
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 4.9e-14 82.0 110 45.5
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 6.4e-14 81.6 143 39.2
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.2e-12 77.4 172 29.7
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.2e-12 77.4 172 29.1
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 1.7e-11 73.6 86 48.8
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 6.6e-11 71.6 86 47.7
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 3.1e-08 62.8 156 33.3
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 2.6e-07 59.7 146 30.1
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 1.7e-06 57.0 140 30.0


User provided reference genes

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