Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-50 202.6 100 100.0
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-42 175.6 112 81.2
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-42 175.3 113 80.5
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.0e-41 170.6 112 79.5
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.8e-37 157.1 112 75.9
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-30 136.0 87 80.5
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.8e-30 134.4 87 79.3
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.1e-30 133.7 87 77.0
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.7e-24 115.9 86 68.6
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.9e-23 112.5 86 67.4
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 9.6e-23 110.2 92 62.0
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.1e-22 109.0 85 63.5
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 9.0e-21 103.6 89 59.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 5.4e-18 94.4 85 57.6
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 2.1e-17 92.4 87 52.9
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 7.9e-17 90.5 85 54.1
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.3e-16 89.0 83 55.4
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.0e-16 88.6 85 52.9
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.9e-16 88.2 87 52.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.5e-15 85.5 83 53.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.5e-15 85.5 83 53.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 3.3e-15 85.1 86 54.7
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 4.8e-14 81.3 83 51.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 4.8e-14 81.3 74 56.8
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 8.1e-14 80.5 90 46.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.8e-13 79.3 83 50.6
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.8e-13 79.3 81 51.9
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 3.1e-13 78.6 87 47.1
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.1e-13 78.6 82 50.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 4.0e-13 78.2 86 47.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 5.3e-13 77.8 90 48.9
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.9e-13 77.4 85 49.4
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 9.0e-13 77.0 85 50.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 9.0e-13 77.0 73 53.4
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.2e-12 76.6 85 47.1
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.2e-12 76.6 83 47.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.0e-12 75.9 81 50.6
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 2.0e-12 75.9 76 53.9
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 2.6e-12 75.5 78 52.6
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.6e-12 75.5 83 48.2
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.6e-12 75.5 83 48.2
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.6e-12 75.5 83 48.2
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 2.6e-12 75.5 83 48.2
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.4e-12 75.1 85 44.7
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 4.5e-12 74.7 73 52.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.8e-12 74.3 85 48.2
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.0e-11 73.6 87 42.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.3e-11 73.2 77 49.4
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-11 72.8 86 45.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.7e-11 72.8 86 45.3
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.2e-11 72.4 93 43.0
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.9e-11 72.0 85 49.4
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.9e-11 72.0 79 48.1
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 2.9e-11 72.0 91 45.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.8e-11 71.6 81 45.7
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.1e-10 70.1 86 51.2
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-10 70.1 86 44.2
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.1e-10 70.1 74 51.4
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.4e-10 69.7 85 40.0
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.9e-10 69.3 80 48.8
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.9e-10 69.3 87 41.4
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.5e-10 68.9 87 44.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.5e-10 68.9 72 48.6
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 3.2e-10 68.6 81 48.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.2e-10 68.6 80 43.8
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.2e-10 68.2 93 41.9
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.5e-10 67.8 87 43.7
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 7.1e-10 67.4 88 43.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 9.3e-10 67.0 81 48.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 9.3e-10 67.0 87 44.8
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.2e-09 66.6 76 48.7
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.6e-09 66.2 87 39.1
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.6e-09 66.2 87 39.1
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 2.1e-09 65.9 87 39.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.7e-09 65.5 82 45.1
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 4.6e-09 64.7 72 44.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 4.6e-09 64.7 83 42.2
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 4.6e-09 64.7 87 41.4
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 4.6e-09 64.7 72 47.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.0e-08 63.5 74 50.0
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.3e-08 63.2 89 41.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.3e-08 63.2 86 41.9
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.8e-08 62.8 75 45.3
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.8e-08 62.8 75 45.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.8e-08 62.8 80 47.5
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.8e-08 62.8 98 39.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.0e-08 62.0 80 45.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 3.0e-08 62.0 82 46.3
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 5.1e-08 61.2 68 48.5
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 5.1e-08 61.2 80 46.2
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 8.7e-08 60.5 78 46.2
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 8.7e-08 60.5 76 44.7
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 8.7e-08 60.5 93 38.7
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 8.7e-08 60.5 85 43.5
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.1e-07 60.1 79 45.6
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.3e-07 58.5 74 45.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 4.3e-07 58.2 73 47.9
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 7.4e-07 57.4 81 44.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 2.8e-06 55.5 74 43.2
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 2.8e-06 55.5 74 43.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 2.8e-06 55.5 74 43.2


User provided reference genes

Program Settings