Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 2.7e-36 154.8 79 100.0
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 3.3e-26 121.3 79 79.7
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 3.3e-26 121.3 79 79.7
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 3.3e-26 121.3 79 79.7
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 4.3e-26 120.9 79 77.2
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 5.6e-26 120.6 79 74.7
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 7.3e-26 120.2 79 75.9
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 7.3e-26 120.2 79 78.5
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 7.3e-26 120.2 77 79.2
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 1.6e-25 119.0 79 78.5
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 1.6e-25 119.0 79 78.5
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 1.6e-25 119.0 79 74.7
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 2.1e-25 118.6 79 75.9
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 2.1e-25 118.6 78 75.6
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 2.8e-25 118.2 79 75.9
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 4.7e-25 117.5 79 74.7
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 4.7e-25 117.5 79 74.7
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 8.1e-25 116.7 79 77.2
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 8.1e-25 116.7 79 77.2
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 1.8e-24 115.5 80 72.5
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 2.4e-24 115.2 79 73.4
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 2.4e-24 115.2 79 72.2
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 5.2e-24 114.0 79 69.6
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 5.2e-24 114.0 79 70.9
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 5.2e-24 114.0 79 72.2
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 6.9e-24 113.6 78 67.9
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 6.9e-24 113.6 79 70.9
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 6.9e-24 113.6 84 71.4
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 9.0e-24 113.2 77 68.8
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 1.5e-23 112.5 79 72.2
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 1.5e-23 112.5 77 70.1
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 1.5e-23 112.5 77 71.4
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 1.5e-23 112.5 77 71.4
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.0e-23 112.1 78 71.8
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.6e-23 111.7 77 72.7
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 4.4e-23 110.9 79 70.9
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 1.3e-22 109.4 77 70.1
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 1.3e-22 109.4 77 67.5
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 1.7e-22 109.0 79 70.9
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 1.7e-22 109.0 79 69.6
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 2.9e-22 108.2 77 66.2
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 3.8e-22 107.8 79 68.4
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 4.9e-22 107.5 77 66.2
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 4.9e-22 107.5 79 68.4
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 6.4e-22 107.1 78 64.1
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 8.4e-22 106.7 79 63.3
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 1.1e-21 106.3 79 65.8
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.2e-21 104.8 81 67.9
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 3.2e-21 104.8 81 67.9
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 3.2e-21 104.8 82 65.9
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 1.2e-20 102.8 65 80.0
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 1.2e-20 102.8 81 65.4
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 1.6e-20 102.4 77 66.2
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 2.1e-20 102.1 80 65.0
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 2.1e-20 102.1 90 63.3
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.7e-20 101.7 81 64.2
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.7e-20 101.7 81 64.2
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.7e-20 101.7 81 64.2
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 3.5e-20 101.3 81 65.4
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 6.0e-20 100.5 78 64.1
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.0e-20 100.5 81 63.0
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 6.0e-20 100.5 78 66.7
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 6.0e-20 100.5 88 65.9
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 7.8e-20 100.1 81 65.4
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 7.8e-20 100.1 74 66.2
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 7.8e-20 100.1 81 63.0
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 7.8e-20 100.1 82 69.5
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.3e-19 99.4 81 63.0
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.3e-19 99.4 81 63.0
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.3e-19 98.6 81 63.0
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 3.0e-19 98.2 80 63.8
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 3.9e-19 97.8 78 62.8
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 8.7e-19 96.7 81 64.2
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 1.1e-18 96.3 78 62.8
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.9e-18 95.5 80 66.2
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 2.5e-18 95.1 78 61.5
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 4.3e-18 94.4 81 63.0
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 9.6e-18 93.2 74 64.9
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 1.6e-17 92.4 77 64.9
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 2.8e-17 91.7 80 62.5
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 2.8e-17 91.7 80 61.2
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 8.1e-17 90.1 63 73.0
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 1.1e-16 89.7 83 60.2
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 1.1e-16 89.7 83 61.4
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 1.8e-16 89.0 83 60.2
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.4e-16 88.6 73 63.0
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.4e-16 88.6 82 56.1
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.4e-16 88.6 82 56.1
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 5.3e-16 87.4 78 61.5
Rhsim04G0026600 Rhododendron simsii HOM05D007547 ORTHO05D009590 9.0e-16 86.7 83 57.8
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 1.5e-15 85.9 89 51.7
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 1.7e-14 82.4 89 49.4
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 2.9e-14 81.6 90 55.6
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 2.9e-14 81.6 88 53.4
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 6.4e-14 80.5 79 58.2
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 5.4e-13 77.4 96 50.0
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 1.2e-12 76.3 65 64.6
Os01g0654400 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 4.8e-09 64.3 89 44.9
AL2G39720 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 3.1e-08 61.6 47 66.0
SMO145G0072 Selaginella moellendorffii HOM05D007547 ORTHO05D009590 2.6e-07 58.5 81 48.1
Mapoly0106s0030 Marchantia polymorpha HOM05D007547 ORTHO05D009590 1.3e-06 56.2 85 42.4
Duzib114G0968 Durio zibethinus HOM05D000021 ORTHO05D000010 2.2e-06 55.5 49 61.2


User provided reference genes

Program Settings