Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.5e-56 223.0 146 100.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.3e-55 219.9 146 98.6
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 4.6e-34 148.3 151 74.2
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.5e-24 116.7 150 64.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.7e-24 114.8 164 57.9
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.3e-23 113.6 158 62.7
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 8.2e-23 110.9 101 65.3
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.2e-21 107.1 137 54.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.5e-21 106.7 121 53.7
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 5.9e-21 104.8 152 61.2
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.0e-20 104.0 76 67.1
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.7e-20 103.2 76 67.1
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.2e-20 102.8 166 57.8
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.0e-20 101.7 81 67.9
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 4.2e-19 98.6 131 51.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.2e-18 97.1 80 71.2
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.1e-18 96.3 107 57.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.1e-18 96.3 145 61.4
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 4.7e-18 95.1 133 47.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 6.1e-18 94.7 145 57.2
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 8.0e-18 94.4 167 56.3
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.4e-17 93.6 116 55.2
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-17 93.6 146 54.1
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.4e-17 93.6 112 64.3
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.8e-17 93.2 120 52.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 2.3e-17 92.8 119 53.8
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.0e-17 92.4 116 59.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 5.2e-17 91.7 119 52.1
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 5.2e-17 91.7 119 52.1
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.2e-17 91.7 146 61.0
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.2e-17 91.7 61 73.8
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.2e-17 91.7 60 75.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.2e-17 91.7 136 54.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 6.7e-17 91.3 62 71.0
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 8.8e-17 90.9 102 54.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.8e-17 90.9 115 60.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.8e-17 90.9 115 53.9
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.1e-16 90.5 85 75.3
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.1e-16 90.5 102 54.9
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-16 90.1 116 59.5
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 3.3e-16 89.0 113 54.0
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 3.3e-16 89.0 143 58.7
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 3.3e-16 89.0 70 65.7
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.4e-16 88.6 107 52.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 5.7e-16 88.2 56 85.7
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 5.7e-16 88.2 94 58.5
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.7e-16 88.2 77 89.6
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 7.4e-16 87.8 100 52.0
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 7.4e-16 87.8 100 52.0
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 7.4e-16 87.8 100 52.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 7.4e-16 87.8 47 85.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 7.4e-16 87.8 62 69.4
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 9.7e-16 87.4 80 87.5
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 9.7e-16 87.4 97 60.8
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 9.7e-16 87.4 144 59.7
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 9.7e-16 87.4 52 90.4
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.7e-15 86.7 107 48.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.7e-15 86.7 110 50.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.7e-15 86.7 158 56.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.7e-15 86.7 157 52.9
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.2e-15 86.3 45 86.7
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.2e-15 86.3 45 86.7
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.2e-15 86.3 45 86.7
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.2e-15 86.3 123 48.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 2.8e-15 85.9 118 50.8
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 2.8e-15 85.9 118 50.8
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 2.8e-15 85.9 118 50.8
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.8e-15 85.9 126 62.7
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 2.8e-15 85.9 109 50.5
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.8e-15 85.9 114 51.8
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 3.7e-15 85.5 123 46.3
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.7e-15 85.5 106 52.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.8e-15 85.1 116 49.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 4.8e-15 85.1 117 51.3
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 4.8e-15 85.1 47 87.2
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.8e-15 85.1 78 87.2
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 6.3e-15 84.7 149 52.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.2e-15 84.3 148 56.1
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 8.2e-15 84.3 47 80.9
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.1e-14 84.0 107 52.3
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.1e-14 84.0 69 63.8
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.4e-14 83.6 55 72.7
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.8e-14 83.2 102 58.8
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.8e-14 83.2 87 74.7
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.4e-14 82.8 66 63.6
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 4.1e-14 82.0 61 70.5
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 5.3e-14 81.6 77 62.3
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.3e-14 81.6 42 85.7
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 9.1e-14 80.9 41 87.8
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 9.1e-14 80.9 117 47.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 9.1e-14 80.9 137 53.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.2e-13 80.5 151 57.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 46 82.6
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.6e-13 80.1 119 47.1
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.0e-13 79.7 122 50.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.5e-13 79.0 125 48.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.5e-13 78.6 90 54.4
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 4.5e-13 78.6 89 53.9
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 5.9e-13 78.2 101 50.5
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 7.7e-13 77.8 42 83.3
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.7e-13 77.8 104 46.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.3e-12 77.0 107 54.2
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.3e-12 77.0 116 52.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.3e-12 77.0 98 50.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.2e-12 76.3 116 49.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.2e-12 76.3 87 47.1
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.9e-12 75.9 47 74.5
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 3.8e-12 75.5 40 82.5
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 3.8e-12 75.5 40 82.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.1e-11 73.9 46 73.9
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.5e-11 73.6 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.5e-11 73.6 35 91.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.5e-11 73.6 109 46.8
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.5e-11 72.8 38 81.6
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.2e-11 72.4 40 80.0
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.2e-11 72.0 111 45.0
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 5.5e-11 71.6 35 85.7
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 7.2e-11 71.2 106 46.2
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 7.2e-11 71.2 105 49.5
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 7.2e-11 71.2 40 77.5
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 7.2e-11 71.2 106 45.3
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 7.2e-11 71.2 84 51.2
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.1e-10 69.7 35 80.0
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.7e-10 69.3 96 52.1
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.4e-09 67.0 96 46.9
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.2e-08 63.9 99 43.4
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 9.7e-08 60.8 174 35.1
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 9.1e-06 54.3 43 69.8


User provided reference genes

Program Settings