Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011636 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.9e-36 155.2 72 100.0
CSS0044790 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.9e-36 155.2 72 100.0
CSS0039205 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.2e-32 140.2 72 87.5
CSS0013431 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.0e-30 135.2 72 90.3
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 1.2e-19 99.4 57 78.9
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.6e-19 99.0 57 82.5
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.6e-19 99.0 57 82.5
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.6e-19 99.0 57 82.5
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.6e-19 99.0 57 82.5
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.7e-19 98.2 57 80.7
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 6.1e-19 97.1 57 80.7
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 7.9e-19 96.7 57 75.4
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 1.0e-18 96.3 57 77.2
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 1.0e-18 96.3 57 77.2
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 1.0e-18 96.3 48 91.7
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 1.3e-18 95.9 48 89.6
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.3e-18 95.9 57 77.2
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 1.8e-18 95.5 48 89.6
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 2.3e-18 95.1 48 91.7
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 2.3e-18 95.1 57 78.9
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 2.3e-18 95.1 58 75.9
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 3.0e-18 94.7 48 89.6
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 3.0e-18 94.7 48 89.6
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 3.9e-18 94.4 48 85.4
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 5.1e-18 94.0 59 69.5
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 5.1e-18 94.0 48 87.5
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 5.1e-18 94.0 48 85.4
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 5.1e-18 94.0 48 89.6
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 5.1e-18 94.0 57 77.2
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 6.7e-18 93.6 48 87.5
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 6.7e-18 93.6 48 89.6
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 6.7e-18 93.6 48 89.6
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 6.7e-18 93.6 48 89.6
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 6.7e-18 93.6 57 78.9
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 8.7e-18 93.2 47 87.2
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 8.7e-18 93.2 48 87.5
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 8.7e-18 93.2 48 87.5
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 1.1e-17 92.8 48 83.3
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 1.1e-17 92.8 48 89.6
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 1.1e-17 92.8 47 89.4
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 1.1e-17 92.8 48 89.6
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 1.1e-17 92.8 48 85.4
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.1e-17 92.8 48 87.5
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.1e-17 92.8 48 87.5
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 83.3
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 85.4
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 85.4
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 87.5
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 1.5e-17 92.4 57 71.9
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 87.5
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 87.5
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 85.4
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 87.5
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 1.5e-17 92.4 48 87.5
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 1.9e-17 92.0 48 85.4
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 1.9e-17 92.0 48 83.3
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.9e-17 92.0 47 89.4
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.9e-17 92.0 47 89.4
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.9e-17 92.0 47 89.4
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 1.9e-17 92.0 48 87.5
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 1.9e-17 92.0 48 85.4
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 1.9e-17 92.0 48 85.4
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 2.5e-17 91.7 48 85.4
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 2.5e-17 91.7 48 85.4
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 3.3e-17 91.3 55 74.5
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 3.3e-17 91.3 48 83.3
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 3.3e-17 91.3 48 87.5
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 3.3e-17 91.3 48 87.5
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 3.3e-17 91.3 48 87.5
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 4.3e-17 90.9 48 85.4
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 4.3e-17 90.9 48 87.5
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 4.3e-17 90.9 48 87.5
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 4.3e-17 90.9 48 85.4
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 4.3e-17 90.9 48 81.2
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 83.3
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 83.3
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 83.3
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 5.7e-17 90.5 48 83.3
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 85.4
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 85.4
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 85.4
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 85.4
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 83.3
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 7.4e-17 90.1 48 85.4
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 9.7e-17 89.7 68 64.7
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 81.2
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 81.2
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 9.7e-17 89.7 48 85.4
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 1.3e-16 89.4 47 85.1
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 81.2
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 85.4
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 83.3
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 83.3
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 1.3e-16 89.4 48 83.3
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 81.2
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 83.3
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 83.3
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 79.2
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.6e-16 89.0 48 79.2
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.6e-16 89.0 45 86.7
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 1.6e-16 89.0 47 85.1
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 2.2e-16 88.6 48 83.3
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 2.2e-16 88.6 65 60.0
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 2.2e-16 88.6 48 83.3
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 2.2e-16 88.6 48 83.3
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 2.2e-16 88.6 48 83.3
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 2.2e-16 88.6 47 83.0
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 2.2e-16 88.6 57 75.4
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.8e-16 88.2 46 82.6
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 2.8e-16 88.2 55 72.7
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 3.7e-16 87.8 48 81.2
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 83.3
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 4.8e-16 87.4 48 85.4
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 4.8e-16 87.4 47 80.9
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 6.3e-16 87.0 48 81.2
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 6.3e-16 87.0 48 83.3
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 1.1e-15 86.3 48 81.2
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 1.4e-15 85.9 48 79.2
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 1.8e-15 85.5 58 70.7
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 1.8e-15 85.5 47 83.0
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 2.4e-15 85.1 48 79.2
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.1e-15 84.7 47 83.0
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 3.1e-15 84.7 45 84.4
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 4.1e-15 84.3 46 84.8
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 6.9e-15 83.6 48 77.1
CSS0022413 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.0e-14 82.0 38 94.7
Eucgr.E00976 Eucalyptus grandis HOM05D003558 ORTHO05D045319 3.4e-14 81.3 55 67.3
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 4.5e-14 80.9 40 90.0
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 4.5e-14 80.9 49 75.5
Eucgr.E00716 Eucalyptus grandis HOM05D003558 ORTHO05D045319 1.7e-13 79.0 54 64.8
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 2.2e-13 78.6 48 70.8
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 2.9e-13 78.2 48 72.9
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 2.9e-13 78.2 49 71.4
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.5e-13 77.0 48 72.9
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.1e-12 76.3 42 81.0
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 1.1e-12 76.3 48 70.8
CSS0029098 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D113448 4.2e-12 74.3 35 82.9
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 4.6e-11 70.9 46 71.7
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 4.6e-11 70.9 42 78.6
CSS0026608 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D109376 4.3e-09 64.3 29 89.7
CSS0042415 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D112199 4.8e-08 60.8 38 68.4
CSS0047259 Camellia sinensis var. sinensis HOM05D027468 ORTHO05D109356 2.4e-07 58.5 29 86.2
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.5e-06 55.8 34 79.4
FvH4_6g31620 Fragaria vesca HOM05D003558 ORTHO05D004392 4.5e-06 54.3 37 64.9
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 7.7e-06 53.5 43 46.5


User provided reference genes

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