Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011578 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D112420 5.6e-39 163.7 77 100.0
CSS0035949 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D109229 7.4e-39 163.3 77 98.7
CSS0004508 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D110132 1.3e-38 162.5 77 97.4
CSS0042942 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D112959 1.3e-38 162.5 77 97.4
CSS0017760 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D111924 9.0e-37 156.4 77 94.8
Peaxi162Scf00398g00725 Petunia axillaris HOM05D000207 ORTHO05D004473 3.6e-09 64.7 98 38.8
Nitab4.5_0003408g0150 Nicotiana tabacum HOM05D000207 ORTHO05D004473 6.1e-09 63.9 98 37.8
PGSC0003DMG402027355 Solanum tuberosum HOM05D000207 ORTHO05D004473 6.1e-09 63.9 98 37.8
CAN.G135.49 Capsicum annuum HOM05D000207 ORTHO05D004473 7.9e-09 63.5 98 38.8
Nitab4.5_0000593g0180 Nicotiana tabacum HOM05D000207 ORTHO05D004473 7.9e-09 63.5 98 37.8
PSO339G2723 Papaver somniferum HOM05D000207 ORTHO05D004473 7.9e-09 63.5 94 40.4
PSO384G5087 Papaver somniferum HOM05D000207 ORTHO05D004473 7.9e-09 63.5 94 40.4
Peaxi162Scf00253g00141 Petunia axillaris HOM05D000207 ORTHO05D004473 7.9e-09 63.5 98 38.8
Sc20g0001400 Simmondsia chinensis HOM05D000207 ORTHO05D004473 1.0e-08 63.2 98 38.8
Solyc11g007760.2 Solanum lycopersicum HOM05D000207 ORTHO05D004473 1.0e-08 63.2 98 37.8
Sopen11g003620 Solanum pennellii HOM05D000207 ORTHO05D004473 1.0e-08 63.2 98 37.8
Cc02_g10410 Coffea canephora HOM05D000207 ORTHO05D004473 1.4e-08 62.8 98 37.8
CsaV3_5G035750 Cucumis sativus L. HOM05D000207 ORTHO05D004473 1.4e-08 62.8 94 40.4
DCAR_006380 Daucus carota HOM05D000207 ORTHO05D004473 1.4e-08 62.8 100 37.0
Migut.F00925 Erythranthe guttata HOM05D000207 ORTHO05D004473 1.4e-08 62.8 97 39.2
CAN.G316.5 Capsicum annuum HOM05D000207 ORTHO05D004473 1.8e-08 62.4 98 38.8
Rhsim03G0110400 Rhododendron simsii HOM05D000207 ORTHO05D004473 1.8e-08 62.4 98 37.8
Actinidia06711 Actinidia chinensis HOM05D000207 ORTHO05D004473 2.3e-08 62.0 94 38.3
Ciclev10031678m.g Citrus clementina HOM05D000207 ORTHO05D004473 2.3e-08 62.0 98 37.8
Hma1.2p1_0361F.1_g135950 Hydrangea macrophylla HOM05D000207 ORTHO05D004473 2.3e-08 62.0 94 39.4
Potri.010G232800 Populus trichocarpa HOM05D000207 ORTHO05D004473 2.3e-08 62.0 98 36.7
Sed0021073 Sechium edule HOM05D000207 ORTHO05D004473 2.3e-08 62.0 94 39.4
CANSAT56G2199 Cannabis sativa HOM05D000207 ORTHO05D004473 3.0e-08 61.6 94 38.3
MELO3C012376.2 Cucumis melo HOM05D000207 ORTHO05D004473 3.0e-08 61.6 95 40.0
ECA233G1732 Erigeron canadensis HOM05D000038 ORTHO05D004473 3.0e-08 61.6 98 37.8
Glyma.10G200600 Glycine max HOM05D000207 ORTHO05D004473 3.0e-08 61.6 98 37.8
Nn6g35103 Nelumbo nucifera HOM05D000207 ORTHO05D004473 3.0e-08 61.6 100 38.0
Sed0002916 Sechium edule HOM05D000207 ORTHO05D004473 3.0e-08 61.6 93 40.9
ClCG05G021500 Citrullus lanatus HOM05D000207 ORTHO05D004473 3.9e-08 61.2 94 39.4
Gohir.A01G129100 Gossypium hirsutum HOM05D000207 ORTHO05D004473 3.9e-08 61.2 94 38.3
Gorai.002G144800 Gossypium raimondii HOM05D000207 ORTHO05D004473 3.9e-08 61.2 94 38.3
GSVIVG01034673001 Vitis vinifera HOM05D000207 ORTHO05D004473 3.9e-08 61.2 98 36.7
AL6G14150 Arabidopsis lyrata HOM05D000207 ORTHO05D004473 5.1e-08 60.8 100 37.0
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 5.1e-08 60.8 94 37.2
BraA01t04243Z Brassica rapa HOM05D000207 ORTHO05D004473 5.1e-08 60.8 94 37.2
CSS0023838 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 5.1e-08 60.8 55 58.2
CSS0030375 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 5.1e-08 60.8 55 58.2
FvH4_7g18280 Fragaria vesca HOM05D000207 ORTHO05D004473 5.1e-08 60.8 94 37.2
Hma1.2p1_1625F.1_g294310 Hydrangea macrophylla HOM05D000207 ORTHO05D004473 5.1e-08 60.8 103 35.0
Nn2g13951 Nelumbo nucifera HOM05D000207 ORTHO05D004473 5.1e-08 60.8 94 37.2
Oeu047513.2 Olea europaea HOM05D000207 ORTHO05D004473 5.1e-08 60.8 104 38.5
CSS0024824 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 6.7e-08 60.5 94 38.3
CSS0035486 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 6.7e-08 60.5 94 38.3
Lj2C25T7 Lonicera japonica HOM05D000207 ORTHO05D004473 6.7e-08 60.5 100 37.0
Lj5g0004677 Lotus japonicus HOM05D000207 ORTHO05D004473 6.7e-08 60.5 94 38.3
Lalb_Chr02g0151221 Lupinus albus HOM05D000207 ORTHO05D004473 6.7e-08 60.5 69 46.4
Ah.04g163540 Amaranthus hybridus HOM05D000207 ORTHO05D004473 8.8e-08 60.1 56 55.4
Carub.0006s0345 Capsella rubella HOM05D000207 ORTHO05D004473 8.8e-08 60.1 94 38.3
CDE08G1512 Ceratophyllum demersum HOM05D000207 ORTHO05D004473 8.8e-08 60.1 58 55.2
Eucgr.J01029 Eucalyptus grandis HOM05D000207 ORTHO05D004473 8.8e-08 60.1 98 36.7
Thhalv10020612m.g Eutrema salsugineum HOM05D000207 ORTHO05D004473 8.8e-08 60.1 94 37.2
HanXRQChr12g0368411 Helianthus annuus HOM05D000207 ORTHO05D004473 1.1e-07 59.7 98 36.7
Solyc03g071750.3 Solanum lycopersicum HOM05D000207 ORTHO05D004473 1.1e-07 59.7 98 36.7
Sopen03g020030 Solanum pennellii HOM05D000207 ORTHO05D004473 1.1e-07 59.7 98 36.7
PGSC0003DMG400016913 Solanum tuberosum HOM05D000207 ORTHO05D004473 1.1e-07 59.7 98 36.7
TWI38G1628 Tripterygium wilfordii HOM05D000207 ORTHO05D004473 1.1e-07 59.7 94 37.2
HanXRQChr08g0218051 Helianthus annuus HOM05D000207 ORTHO05D004473 1.5e-07 59.3 98 35.7
Lsat_1_v5_gn_8_22900 Lactuca sativa HOM05D000207 ORTHO05D004473 1.5e-07 59.3 98 35.7
SGA_v2.0_scaffold13G06467 Striga asiatica HOM05D000207 ORTHO05D004473 1.5e-07 59.3 55 56.4
MSTRG.9118 Avicennia marina HOM05D000207 ORTHO05D004473 2.0e-07 58.9 58 53.4
BcaC06g32162 Brassica carinata HOM05D000207 ORTHO05D004473 2.0e-07 58.9 55 56.4
EL10As9g23947 Beta vulgaris HOM05D000207 ORTHO05D004473 2.6e-07 58.5 56 53.6
A10p31580 Brassica napus HOM05D000207 ORTHO05D004473 2.6e-07 58.5 55 54.5
C09p72250 Brassica napus HOM05D000207 ORTHO05D004473 2.6e-07 58.5 55 54.5
BolC9t59969H Brassica oleracea HOM05D000207 ORTHO05D004473 2.6e-07 58.5 55 54.5
BraA10t45204Z Brassica rapa HOM05D000207 ORTHO05D004473 2.6e-07 58.5 55 54.5
AUR62043367 Chenopodium quinoa HOM05D000207 ORTHO05D004473 2.6e-07 58.5 56 53.6
AUR62043740 Chenopodium quinoa HOM05D000207 ORTHO05D004473 2.6e-07 58.5 56 53.6
Gohir.D01G118700 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.6e-07 58.5 94 37.2
Lalb_Chr06g0170081 Lupinus albus HOM05D000207 ORTHO05D004473 2.6e-07 58.5 63 49.2
Hund06744 Selenicereus undatus HOM05D000207 ORTHO05D004473 2.6e-07 58.5 56 53.6
SEGI_25768 Sequoiadendron giganteum HOM05D000207 ORTHO05D004473 2.6e-07 58.5 94 38.3
THA.LOC104816450 Tarenaya hassleriana HOM05D000207 ORTHO05D004473 2.6e-07 58.5 63 49.2
Actinidia18562 Actinidia chinensis HOM05D000207 ORTHO05D004473 3.3e-07 58.2 55 54.5
Cpa.g.sc128.64 Carica papaya HOM05D000207 ORTHO05D004473 3.3e-07 58.2 55 54.5
Cfa011202 Carpinus fangiana HOM05D000207 ORTHO05D004473 3.3e-07 58.2 55 54.5
CiPaw.14G027400 Carya illinoinensis HOM05D000207 ORTHO05D004473 3.3e-07 58.2 63 47.6
COL.COLO4_07609 Corchorus olitorius HOM05D001491 ORTHO05D004473 3.3e-07 58.2 55 54.5
Dinv31278 Davidia involucrata HOM05D001491 ORTHO05D004473 3.3e-07 58.2 55 54.5
Prupe.2G204000 Prunus persica HOM05D000207 ORTHO05D004473 3.3e-07 58.2 55 54.5
QL04p040407 Quercus lobata HOM05D000207 ORTHO05D004473 3.3e-07 58.2 68 45.6
Thecc.10G093700 Theobroma cacao HOM05D000207 ORTHO05D004473 3.3e-07 58.2 55 54.5
unitig_736.g22534 Utricularia gibba HOM05D000207 ORTHO05D004473 3.3e-07 58.2 56 53.6
unitig_899.g14484 Utricularia gibba HOM05D000207 ORTHO05D004473 3.3e-07 58.2 56 53.6
vmacro07211 Vaccinium macrocarpon HOM05D000207 ORTHO05D004473 3.3e-07 58.2 55 54.5
Atru.chr12.932 Acer truncatum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Aa31LG11G5380 Aethionema arabicum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Aa31LG3G3390 Aethionema arabicum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 54 55.6
AL3G21960 Arabidopsis lyrata HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
AT3G10540 Arabidopsis thaliana HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
AT5G04510 Arabidopsis thaliana HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
arahy.Tifrunner.gnm1.ann1.I5SWNV Arachis hypogaea HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
arahy.Tifrunner.gnm1.ann1.MV6I8X Arachis hypogaea HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
MSTRG.27513 Avicennia marina HOM05D000207 ORTHO05D004473 4.4e-07 57.8 61 52.5
BcaB04g21234 Brassica carinata HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
BcaC05g29451 Brassica carinata HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 4.4e-07 57.8 55 54.5
BcaNung05806 Brassica carinata HOM05D000146 ORTHO05D004473 4.4e-07 57.8 55 54.5
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 4.4e-07 57.8 55 54.5
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 4.4e-07 57.8 55 54.5
BolC1t05385H Brassica oleracea HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 4.4e-07 57.8 55 54.5
BraA05t22653Z Brassica rapa HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Carub.0003s0978 Capsella rubella HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
CARHR085060 Cardamine hirsuta HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
CARHR208760 Cardamine hirsuta HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
CDE02G2680 Ceratophyllum demersum HOM05D000146 ORTHO05D004473 4.4e-07 57.8 58 53.4
Ca_10467_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Migut.F01666 Erythranthe guttata HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Glyma.20G190000 Glycine max HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Lalb_Chr19g0129301 Lupinus albus HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Medtr1g090917 Medicago truncatula HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Nitab4.5_0001016g0070 Nicotiana tabacum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Nitab4.5_0001313g0010 Nicotiana tabacum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Phvul.007G144600 Phaseolus vulgaris HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Psat0s1617g0040 Pisum sativum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Psat0s2832g0040 Pisum sativum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Psat6g174800 Pisum sativum HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Potri.008G028800 Populus trichocarpa HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Sabra10G0180600 Salix brachista HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Sp3g08820 Schrenkiella parvula HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
Sp6g38240 Schrenkiella parvula HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
TPR.G21921 Trifolium pratense HOM05D000207 ORTHO05D004473 4.4e-07 57.8 55 54.5
CiPaw.13G034800 Carya illinoinensis HOM05D000207 ORTHO05D004473 5.7e-07 57.4 55 52.7
Manes.10G054000 Manihot esculenta HOM05D000207 ORTHO05D004473 5.7e-07 57.4 55 52.7
TAR623G1710 Trochodendron aralioides HOM05D000207 ORTHO05D004473 5.7e-07 57.4 55 52.7
MD07G1165300 Malus domestica HOM05D000207 ORTHO05D004473 7.4e-07 57.0 55 52.7
SalBow4G0022 Salvia bowleyana HOM05D000207 ORTHO05D004473 7.4e-07 57.0 55 54.5
TAR633G0321 Trochodendron aralioides HOM05D001933 ORTHO05D004473 7.4e-07 57.0 55 54.5
Aqoxy2G01506 Aquilegia oxysepala HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
Duzib128G1411 Durio zibethinus HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 54.5
FAN01G1531 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
FAN01G2015 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
FAN03G1778 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
FAN06G3011 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
FAN10G1843 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
FAN10G1984 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
Lj3A934G30 Lonicera japonica HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
RcHm_v2.0_Chr1g0361861 Rosa chinensis HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 52.7
Zm00001eb146330 Zea mays HOM05D000207 ORTHO05D004473 9.7e-07 56.6 55 54.5
Thhalv10013385m.g Eutrema salsugineum HOM05D000207 ORTHO05D004473 1.3e-06 56.2 55 52.7
VMungo0720G2759 Vigna mungo HOM05D000207 ORTHO05D004473 1.3e-06 56.2 55 52.7
DCAR_014270 Daucus carota HOM05D000207 ORTHO05D004473 1.7e-06 55.8 61 45.9
HPP92_025159 Vanilla planifolia HOM05D000207 ORTHO05D004473 1.7e-06 55.8 55 50.9
Haze_02644 Corylus avellana HOM05D000207 ORTHO05D004473 2.2e-06 55.5 25 92.0
Duzib114G0299 Durio zibethinus HOM05D000207 ORTHO05D004473 2.2e-06 55.5 25 92.0
Gohir.A05G290300 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.2e-06 55.5 55 49.1
Gohir.A05G394175 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.2e-06 55.5 55 50.9
Gohir.D05G291500 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.2e-06 55.5 55 49.1
Gorai.009G307200 Gossypium raimondii HOM05D000207 ORTHO05D004473 2.2e-06 55.5 55 49.1
MD01G1098600 Malus domestica HOM05D000207 ORTHO05D004473 2.2e-06 55.5 25 92.0
Manes.07G093000 Manihot esculenta HOM05D000207 ORTHO05D004473 2.2e-06 55.5 25 92.0
Os01g0872800 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004473 2.8e-06 55.1 55 50.9
PSO063G1339 Papaver somniferum HOM05D000207 ORTHO05D004473 3.7e-06 54.7 38 65.8
PSO339G3642 Papaver somniferum HOM05D000207 ORTHO05D004473 3.7e-06 54.7 38 65.8
PGR044G1457 Punica granatum HOM05D000207 ORTHO05D004473 3.7e-06 54.7 55 50.9


User provided reference genes

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