Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.9e-144 515.8 252 100.0
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.1e-143 510.8 252 98.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.5e-112 409.1 255 78.4
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 8.1e-111 404.1 252 77.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.9e-104 382.9 256 75.0
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.3e-104 381.7 255 72.2
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.4e-102 376.7 251 73.3
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 4.5e-101 371.7 258 70.9
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 9.9e-101 370.5 243 76.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.4e-99 366.7 253 72.3
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.2e-99 365.5 253 73.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.0e-97 360.5 256 69.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 8.7e-97 357.5 257 68.5
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.5e-96 355.9 253 68.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.7e-95 352.1 252 69.0
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.4e-94 350.1 256 68.4
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.4e-94 349.4 254 66.5
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 5.3e-94 348.2 254 66.5
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 9.0e-94 347.4 252 70.2
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 9.0e-94 347.4 261 68.6
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 9.0e-94 347.4 259 67.6
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.3e-92 343.6 258 67.4
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.2e-92 342.8 251 66.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.9e-92 342.4 259 67.6
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.9e-92 341.7 256 65.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.9e-92 341.7 256 65.2
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 6.4e-92 341.3 255 66.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.4e-91 340.1 262 67.2
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.5e-91 339.3 251 67.7
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-91 339.3 256 64.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.2e-91 339.0 257 67.7
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 4.2e-91 338.6 259 65.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 5.5e-91 338.2 237 70.9
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.2e-90 337.0 252 67.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.0e-90 334.7 251 66.1
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.0e-89 334.0 258 65.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 6.7e-89 331.3 245 70.2
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 5.6e-88 328.2 251 64.5
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 9.6e-88 327.4 255 63.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.6e-88 327.4 255 65.5
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.3e-87 327.0 251 64.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.6e-87 326.6 251 65.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.8e-87 325.9 257 63.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.8e-87 325.1 248 64.5
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.8e-87 325.1 262 63.7
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.4e-86 323.6 247 66.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.4e-86 323.6 261 63.6
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.4e-86 323.6 254 64.6
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.4e-86 322.8 251 65.7
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 6.9e-86 321.2 224 70.5
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 6.9e-86 321.2 236 69.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 9.0e-86 320.9 264 63.6
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.0e-85 319.7 249 66.3
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.4e-85 318.9 252 63.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.0e-84 317.4 244 67.2
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.3e-84 317.0 238 66.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.2e-84 316.2 180 82.8
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.9e-84 315.8 256 61.3
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.9e-84 315.8 244 64.3
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 3.8e-84 315.5 217 70.5
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 3.8e-84 315.5 217 70.5
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.5e-84 314.7 247 64.4
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 8.4e-84 314.3 256 63.7
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.4e-83 313.5 247 64.8
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-83 313.5 247 64.8
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-83 313.5 262 62.2
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-83 313.2 256 60.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.5e-83 312.8 256 64.5
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.5e-83 312.8 186 77.4
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 3.2e-83 312.4 255 61.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.2e-83 312.0 252 65.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.2e-82 310.5 252 64.7
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.6e-82 310.1 219 67.1
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.1e-82 309.7 179 79.9
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.5e-82 308.9 247 62.8
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 4.6e-82 308.5 180 80.0
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 6.0e-82 308.1 249 64.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 6.0e-82 308.1 247 60.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.0e-82 308.1 250 63.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-81 307.4 250 64.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.0e-81 305.8 258 62.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 5.1e-81 305.1 235 64.7
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 6.7e-81 304.7 254 61.0
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.7e-81 304.3 247 62.8
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.1e-80 303.9 251 61.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-80 303.9 257 62.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.5e-80 303.5 251 62.9
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.5e-80 303.5 251 62.9
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 4.3e-80 302.0 253 60.5
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 7.4e-80 301.2 253 63.2
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.6e-79 300.1 257 61.1
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 4.8e-79 298.5 262 60.3
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 6.3e-79 298.1 257 60.3
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 6.3e-79 298.1 222 64.9
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 6.3e-79 298.1 259 61.8
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 6.3e-79 298.1 288 55.9
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.4e-78 297.0 216 68.5
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-78 297.0 255 60.0
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.8e-78 296.6 258 60.9
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.4e-78 296.2 246 62.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 4.1e-78 295.4 250 60.4
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 5.3e-78 295.0 257 59.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 5.3e-78 295.0 242 65.3
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 6.9e-78 294.7 261 60.5
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.0e-77 293.1 263 59.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.0e-77 293.1 184 74.5
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.6e-77 292.7 251 61.0
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 2.6e-77 292.7 220 65.0
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 4.5e-77 292.0 228 63.6
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-76 290.8 184 72.8
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.0e-76 290.8 253 60.1
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.9e-75 286.6 256 58.2
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.9e-75 286.6 177 74.6
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 4.2e-75 285.4 253 59.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 9.4e-75 284.3 250 61.2
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.1e-74 281.6 256 60.2
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.4e-73 280.4 255 56.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.3e-73 279.6 219 63.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 5.1e-73 278.5 185 70.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 9.1e-70 267.7 166 78.9
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.2e-68 263.1 231 59.7
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.0e-68 261.9 214 62.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.0e-68 261.9 256 53.9
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 6.5e-68 261.5 252 56.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.2e-66 257.3 218 60.1
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.1e-66 255.0 150 79.3
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.0e-65 254.2 218 59.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-63 247.3 184 65.2
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.7e-63 246.9 137 83.2
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.2e-63 246.5 215 60.5
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.1e-62 242.7 202 60.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 2.2e-60 236.5 256 52.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 5.0e-60 235.3 170 62.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.6e-58 229.2 221 56.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 6.7e-57 224.9 164 63.4
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.8e-57 224.6 164 63.4
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-56 224.2 152 71.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-56 224.2 260 48.5
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.7e-55 220.3 254 49.6
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.2e-55 219.9 143 70.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.8e-55 219.5 181 57.5
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 6.3e-55 218.4 170 60.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.2e-52 209.9 171 56.1
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 7.5e-48 194.9 111 81.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 8.6e-36 154.8 90 78.9
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-33 146.7 115 60.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 3.4e-32 142.9 143 53.8
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 9.8e-32 141.4 99 69.7
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.7e-31 139.4 212 41.5
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-30 135.2 84 75.0
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-27 127.9 85 64.7
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.5e-27 126.7 97 67.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 3.3e-27 126.3 213 32.9
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.0e-24 117.1 78 74.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 4.9e-23 112.5 141 39.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-23 111.7 73 71.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 8.3e-23 111.7 65 76.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 5.4e-22 109.0 63 81.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-18 96.3 67 64.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-15 85.1 86 48.8
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.5e-13 79.7 52 69.2
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 5.1e-12 75.9 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.3e-11 73.2 52 65.4
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.5e-11 71.6 39 79.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-10 71.2 51 64.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.4e-08 62.8 43 69.8
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.9e-07 60.1 37 64.9
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 3.7e-07 59.7 33 75.8


User provided reference genes

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