Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 8.5e-224 780.0 394 100.0
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 8.6e-192 673.7 394 88.8
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.9e-135 486.5 271 91.1
Actinidia16803 Actinidia chinensis HOM05D014353 ORTHO05D002944 7.4e-103 378.3 409 54.5
Rhsim13G0191200 Rhododendron simsii HOM05D014353 ORTHO05D002944 1.8e-77 293.9 414 46.4
Actinidia35571 Actinidia chinensis HOM05D014353 ORTHO05D002944 9.5e-74 281.6 291 57.7
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 3.7e-62 243.0 287 49.5
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 4.1e-53 213.0 305 44.3
CSS0028772 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 3.5e-44 183.3 409 36.7
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 9.3e-37 158.7 420 33.1
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 4.5e-31 139.8 453 30.7
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 2.4e-24 117.5 362 31.2
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 4.5e-23 113.2 460 27.8
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 2.2e-22 110.9 435 28.3
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 1.4e-21 108.2 429 30.1
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 7.1e-21 105.9 418 25.8
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 2.7e-20 104.0 455 27.3
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 3.5e-20 103.6 431 26.2
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.3e-19 100.9 464 26.7
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 2.3e-19 100.9 392 26.5
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 2.3e-19 100.9 456 28.1
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 1.1e-18 98.6 436 27.1
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.5e-18 98.2 421 25.7
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 7.4e-18 95.9 442 26.7
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 2.1e-17 94.4 416 26.7
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 2.1e-17 94.4 431 25.1
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 4.8e-17 93.2 427 26.7
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 4.8e-17 93.2 496 24.8
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 8.2e-17 92.4 500 26.2
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.1e-16 92.0 324 31.2
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 2.4e-16 90.9 434 25.1
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 2.4e-16 90.9 424 25.9
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 5.3e-16 89.7 463 26.1
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 1.5e-15 88.2 427 24.6
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 2.6e-15 87.4 404 27.5
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 3.4e-15 87.0 437 24.0
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 3.4e-15 87.0 423 27.4
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 2.2e-14 84.3 413 24.0
Potri.004G055300 Populus trichocarpa HOM05D023908 ORTHO05D002944 2.9e-14 84.0 395 26.3
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 8.4e-14 82.4 432 26.2
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 8.4e-14 82.4 528 24.8
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.4e-13 81.6 495 24.0
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.5e-13 80.9 419 25.5
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 2.5e-13 80.9 428 24.3
TWI63G0650 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 2.5e-13 80.9 395 27.8
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 5.5e-13 79.7 512 22.3
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 5.5e-13 79.7 399 25.1
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 7.1e-13 79.3 424 26.7
CAN.G370.64 Capsicum annuum HOM05D014572 ORTHO05D016880 7.1e-13 79.3 396 25.3
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.2e-12 78.6 421 24.5
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 2.7e-12 77.4 370 24.9
FAN21G3782 Fragaria x ananassa HOM05D016724 ORTHO05D017903 2.7e-12 77.4 428 25.7
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 2.7e-12 77.4 411 23.8
TWI38G0720 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 2.7e-12 77.4 413 26.4
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.7e-12 77.4 74 48.6
Sabra04G0036000 Salix brachista HOM05D023908 ORTHO05D002944 3.5e-12 77.0 241 28.2
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 3.5e-12 77.0 404 26.5
Nitab4.5_0003322g0040 Nicotiana tabacum HOM05D014572 ORTHO05D016880 4.6e-12 76.6 396 26.0
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 4.6e-12 76.6 528 23.9
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 1.0e-11 75.5 392 23.2
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 1.0e-11 75.5 446 23.1
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.0e-11 75.5 438 24.2
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 1.3e-11 75.1 470 24.3
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 1.3e-11 75.1 408 25.5
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.8e-11 74.7 520 24.4
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 1.8e-11 74.7 427 23.9
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.8e-11 74.7 445 23.6
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 3.9e-11 73.6 237 24.1
FAN11G3468 Fragaria x ananassa HOM05D016724 ORTHO05D017903 3.9e-11 73.6 426 26.3
FAN16G0791 Fragaria x ananassa HOM05D016724 ORTHO05D017903 3.9e-11 73.6 426 26.3
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 3.9e-11 73.6 130 40.8
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 5.1e-11 73.2 488 24.2
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 5.1e-11 73.2 412 24.8
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 6.7e-11 72.8 417 24.5
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 6.7e-11 72.8 418 25.4
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 8.7e-11 72.4 454 26.4
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 8.7e-11 72.4 289 26.3
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.1e-10 72.0 431 23.2
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.1e-10 72.0 440 24.3
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.5e-10 71.6 141 29.8
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 1.5e-10 71.6 403 23.1
FvH4_3g07930 Fragaria vesca HOM05D016724 ORTHO05D017903 1.5e-10 71.6 424 25.2
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 3.3e-10 70.5 87 41.4
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 3.3e-10 70.5 87 41.4
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 4.3e-10 70.1 490 23.1
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.3e-10 70.1 394 23.4
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 4.3e-10 70.1 488 21.5
Nitab4.5_0009762g0030 Nicotiana tabacum HOM05D014572 ORTHO05D016880 4.3e-10 70.1 397 25.7
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 4.3e-10 70.1 416 24.3
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 5.7e-10 69.7 421 23.8
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 7.4e-10 69.3 102 38.2
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 7.4e-10 69.3 422 23.5
PGSC0003DMG400010210 Solanum tuberosum HOM05D014572 ORTHO05D016880 7.4e-10 69.3 395 23.8
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 9.7e-10 68.9 421 24.2
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.3e-09 68.6 87 40.2
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 1.3e-09 68.6 428 22.9
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.6e-09 68.2 393 22.6
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 2.2e-09 67.8 102 37.3
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 3.7e-09 67.0 419 23.2
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 3.7e-09 67.0 432 22.7
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 3.7e-09 67.0 421 23.3
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 4.8e-09 66.6 399 25.3
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 4.8e-09 66.6 228 26.3
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.8e-09 66.6 393 21.9
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 6.3e-09 66.2 57 47.4
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 6.3e-09 66.2 185 31.4
Peaxi162Scf00261g01114 Petunia axillaris HOM05D014572 ORTHO05D016880 6.3e-09 66.2 372 25.0
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 1.1e-08 65.5 378 23.8
RcHm_v2.0_Chr5g0010561 Rosa chinensis HOM05D016724 ORTHO05D017903 1.1e-08 65.5 408 25.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 1.4e-08 65.1 290 28.6
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 1.4e-08 65.1 503 21.9
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 1.4e-08 65.1 411 24.3
TAR627G0246 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.4e-08 65.1 93 46.2
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.8e-08 64.7 384 22.9
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 1.8e-08 64.7 255 27.5
TWI38G0108 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 1.8e-08 64.7 438 24.4
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 2.4e-08 64.3 419 24.3
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 3.1e-08 63.9 67 43.3
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 4.1e-08 63.5 408 24.8
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 5.3e-08 63.2 57 45.6
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 5.3e-08 63.2 443 24.6
COL.COLO4_17605 Corchorus olitorius HOM05D008023 ORTHO05D002944 5.3e-08 63.2 214 25.2
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 6.9e-08 62.8 464 23.7
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 6.9e-08 62.8 393 23.9
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 9.0e-08 62.4 404 23.8
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 9.0e-08 62.4 424 23.8
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 9.0e-08 62.4 423 22.9
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 9.0e-08 62.4 145 29.0
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 1.2e-07 62.0 56 46.4
Cc02_g14720 Coffea canephora HOM05D014572 ORTHO05D016880 1.2e-07 62.0 396 24.0
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.2e-07 62.0 438 24.9
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.2e-07 62.0 440 23.6
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 1.2e-07 62.0 409 21.8
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 1.5e-07 61.6 63 44.4
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.5e-07 61.6 424 23.6
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 1.5e-07 61.6 415 23.9
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 1.5e-07 61.6 479 24.2
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 1.5e-07 61.6 439 23.9
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 1.5e-07 61.6 55 45.5
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 2.0e-07 61.2 86 38.4
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 3.4e-07 60.5 402 24.9
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.4e-07 60.5 440 23.4
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 3.4e-07 60.5 513 21.8
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 4.5e-07 60.1 57 47.4
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 5.9e-07 59.7 52 46.2
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 5.9e-07 59.7 414 23.4
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 7.7e-07 59.3 52 44.2
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 7.7e-07 59.3 55 45.5
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 7.7e-07 59.3 367 22.6
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 1.0e-06 58.9 175 25.7
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 1.0e-06 58.9 414 23.9
Migut.M01048 Erythranthe guttata HOM05D014353 ORTHO05D002944 1.3e-06 58.5 101 34.7
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.3e-06 58.5 180 26.1
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 1.3e-06 58.5 134 29.1
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.7e-06 58.2 204 30.4
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 2.2e-06 57.8 434 23.3
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 2.2e-06 57.8 179 22.9
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 2.2e-06 57.8 425 22.4
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.2e-06 57.8 195 29.2
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.9e-06 57.4 169 27.8
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 2.9e-06 57.4 265 22.6
CAN.G456.28 Capsicum annuum HOM05D004563 ORTHO05D002944 3.8e-06 57.0 400 26.8
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 5.0e-06 56.6 396 24.2
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 5.0e-06 56.6 521 24.0
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 5.0e-06 56.6 80 41.2
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 5.0e-06 56.6 90 36.7
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 6.5e-06 56.2 55 41.8
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 6.5e-06 56.2 55 41.8
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 6.5e-06 56.2 367 23.2
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 8.5e-06 55.8 85 30.6


User provided reference genes

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