Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 2.6e-153 545.4 294 100.0
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 8.7e-149 530.4 294 98.3
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 9.8e-116 420.6 294 80.3
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 2.9e-112 409.1 295 75.6
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 6.1e-110 401.4 294 76.9
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 5.2e-109 398.3 310 72.6
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.2e-108 397.1 294 75.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 3.7e-99 365.5 295 70.5
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.5e-95 353.6 297 70.0
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.6e-94 350.1 309 67.0
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 8.9e-93 344.4 323 65.9
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.5e-92 343.6 301 66.4
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 1.1e-90 337.4 310 65.2
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.4e-90 337.0 322 64.9
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 1.9e-90 336.7 314 65.6
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 3.2e-90 335.9 306 65.7
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.2e-90 335.9 309 64.7
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 3.5e-89 332.4 327 63.3
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.5e-89 332.4 311 64.6
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.0e-88 330.9 306 64.4
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.7e-88 330.1 296 65.2
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 1.1e-87 327.4 310 61.3
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.5e-87 326.2 342 57.6
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 5.6e-87 325.1 309 61.5
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 9.5e-87 324.3 316 61.4
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.4e-85 320.5 309 61.2
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 4.0e-85 318.9 307 59.9
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 5.2e-85 318.5 316 59.5
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 1.5e-84 317.0 304 61.8
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.0e-84 316.6 331 58.0
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 4.9e-83 312.0 311 59.5
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 6.4e-83 311.6 312 61.5
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 8.3e-83 311.2 309 60.5
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 2.4e-82 309.7 317 59.9
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.4e-82 309.7 316 59.2
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 3.2e-82 309.3 313 58.1
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 1.2e-81 307.4 313 57.5
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.1e-81 306.6 305 62.0
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 3.5e-81 305.8 313 58.1
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 6.0e-81 305.1 314 58.3
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.0e-80 304.3 297 61.3
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 1.3e-80 303.9 307 58.6
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 2.3e-80 303.1 224 72.8
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.0e-80 302.8 314 58.9
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 3.9e-80 302.4 296 60.5
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 1.9e-79 300.1 314 57.6
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 2.5e-79 299.7 304 60.2
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.5e-79 299.7 314 57.6
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 5.6e-79 298.5 304 60.5
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 9.5e-79 297.7 316 58.2
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.2e-78 297.4 316 57.9
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.2e-78 297.4 300 61.3
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.1e-78 296.6 306 61.1
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.1e-77 294.3 314 58.3
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 1.4e-77 293.9 300 60.0
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 1.5e-76 290.4 334 54.2
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 2.0e-76 290.0 315 57.5
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.6e-76 289.7 310 57.1
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 4.4e-76 288.9 318 55.0
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 5.8e-76 288.5 310 59.7
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 7.6e-76 288.1 349 52.4
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 9.9e-76 287.7 316 56.3
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.9e-74 283.5 323 54.2
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.9e-74 283.5 319 53.0
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 3.2e-74 282.7 297 57.6
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 1.2e-73 280.8 310 54.5
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.6e-73 280.4 333 53.5
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 2.1e-73 280.0 310 54.2
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 3.5e-73 279.3 314 53.8
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 4.6e-73 278.9 315 54.9
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.7e-72 276.9 322 54.0
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 2.3e-72 276.6 319 54.5
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 6.6e-72 275.0 316 53.5
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 6.6e-72 275.0 316 53.5
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 8.6e-72 274.6 309 53.7
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 8.6e-72 274.6 309 53.7
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 7.3e-71 271.6 307 51.8
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 1.6e-70 270.4 306 56.2
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 2.1e-70 270.0 308 53.6
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 2.8e-70 269.6 201 73.6
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 1.4e-69 267.3 315 52.4
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.4e-69 267.3 316 52.5
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 2.6e-68 263.1 317 53.9
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 3.4e-68 262.7 303 53.5
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 7.6e-68 261.5 316 50.0
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 2.9e-67 259.6 259 58.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 3.8e-67 259.2 326 49.1
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 3.8e-67 259.2 259 58.3
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 6.4e-67 258.5 295 54.2
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 8.4e-67 258.1 322 50.3
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 5.4e-66 255.4 314 50.6
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 9.3e-66 254.6 286 53.8
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 1.6e-65 253.8 307 50.2
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 7.8e-65 251.5 303 51.5
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 8.7e-64 248.1 316 50.3
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 6.2e-62 241.9 311 49.2
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 1.4e-61 240.7 328 48.8
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.8e-61 240.4 175 77.7
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 9.0e-61 238.0 312 49.4
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 1.5e-60 237.3 254 55.5
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 3.4e-60 236.1 298 51.3
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.1e-58 231.1 294 50.3
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 2.7e-57 226.5 212 62.3
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.9e-55 220.3 316 45.9
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.3e-54 217.6 194 60.8
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.3e-54 217.6 194 60.8
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.3e-54 217.6 309 47.2
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.6e-54 217.2 195 61.0
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 1.8e-53 213.8 175 68.0
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 6.9e-53 211.8 262 50.0
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 4.5e-52 209.1 345 44.9
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.3e-51 207.6 309 46.3
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 6.4e-51 205.3 307 45.3
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 6.4e-51 205.3 307 45.3
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.2e-50 203.0 294 44.9
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.2e-49 201.1 237 54.9
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 2.1e-49 200.3 204 57.4
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.8e-48 197.2 213 54.0
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.1e-47 194.5 248 51.2
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 9.6e-47 191.4 204 53.9
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 2.4e-45 186.8 230 55.2
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 4.0e-45 186.0 207 53.1
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 4.5e-44 182.6 207 53.1
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 1.3e-43 181.0 260 44.2
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 1.2e-41 174.5 337 39.8
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 1.2e-41 174.5 262 46.6
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.3e-40 171.0 101 86.1
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 4.8e-38 162.5 308 40.6
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 6.3e-38 162.2 261 47.1
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.8e-37 160.6 206 51.5
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 9.0e-37 158.3 170 55.3
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.6e-36 156.8 211 50.2
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.3e-35 154.5 300 40.0
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 1.4e-34 151.0 202 43.6
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 7.2e-34 148.7 213 44.1
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 3.0e-32 143.3 108 67.6
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 3.0e-32 143.3 251 44.2
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.3e-31 139.8 203 48.8
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 7.4e-31 138.7 107 64.5
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.1e-29 134.8 98 73.5
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 4.5e-28 129.4 103 68.0
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.1e-26 124.8 149 55.0
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 1.5e-23 114.4 297 36.4
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.9e-19 100.1 125 53.6
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 3.8e-19 99.8 109 56.0
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 6.5e-19 99.0 95 53.7
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 6.7e-16 89.0 71 70.4
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 1.7e-14 84.3 95 51.6
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 3.1e-13 80.1 94 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 3.6e-09 66.6 53 66.0
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.4e-08 64.7 192 32.3
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 2.3e-08 63.9 138 36.2
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 1.5e-07 61.2 147 38.8


User provided reference genes

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