Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.1e-254 880.6 434 100.0
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.0e-246 856.3 421 100.0
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.8e-182 642.9 419 77.1
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 9.5e-176 620.5 422 74.9
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.6e-169 597.4 444 70.3
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.1e-160 570.5 422 67.5
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 4.0e-158 562.0 373 75.3
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 6.4e-156 554.7 373 74.8
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 5.3e-142 508.4 422 62.8
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 2.5e-136 489.6 436 61.9
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 9.6e-136 487.6 422 60.9
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 3.1e-134 482.6 413 60.8
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 3.4e-133 479.2 421 59.6
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 3.3e-128 462.6 429 57.6
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 3.3e-128 462.6 422 55.7
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 3.1e-126 456.1 334 68.3
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 6.9e-126 454.9 412 57.0
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.0e-124 451.1 376 61.4
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 3.8e-124 449.1 423 55.3
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 3.8e-124 449.1 413 55.2
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 4.9e-124 448.7 402 58.7
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 6.4e-124 448.4 396 59.6
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 8.4e-124 448.0 415 58.3
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 2.5e-123 446.4 419 57.3
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 5.5e-123 445.3 422 55.2
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 5.5e-123 445.3 412 55.3
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.2e-122 444.1 434 55.3
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.7e-122 443.0 416 57.7
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 6.0e-122 441.8 426 56.6
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 7.9e-122 441.4 424 55.0
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.3e-121 440.7 424 55.0
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 3.9e-121 439.1 415 57.3
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 5.1e-121 438.7 415 57.3
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 8.7e-121 438.0 413 55.0
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 4.3e-120 435.6 425 53.9
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 7.4e-120 434.9 415 56.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 7.4e-120 434.9 416 55.8
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 3.7e-119 432.6 428 56.1
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 6.2e-119 431.8 422 55.5
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 3.1e-118 429.5 422 51.9
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 5.3e-118 428.7 422 55.0
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 5.3e-118 428.7 424 56.4
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.5e-117 427.2 413 54.7
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 2.0e-117 426.8 413 54.2
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 3.4e-117 426.0 423 54.4
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.7e-116 423.7 423 54.1
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 8.4e-116 421.4 423 54.1
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 3.2e-115 419.5 423 54.1
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 4.6e-114 415.6 427 54.1
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 1.9e-112 410.2 392 56.6
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.4e-110 404.1 392 55.9
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 5.3e-110 402.1 419 52.3
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.4e-109 399.4 423 53.7
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 6.5e-108 395.2 420 53.1
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.4e-107 394.0 489 47.0
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.7e-106 389.8 420 53.1
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 4.6e-106 389.0 420 53.1
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 4.6e-106 389.0 386 54.4
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 7.9e-106 388.3 415 52.5
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 7.9e-106 388.3 413 51.8
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.3e-103 380.9 426 48.4
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.8e-102 377.1 420 49.0
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 6.9e-102 375.2 385 53.5
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.2e-101 374.4 385 53.5
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 1.2e-101 374.4 387 52.7
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.5e-101 374.0 385 53.2
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.2e-99 365.2 385 52.5
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 1.6e-98 364.0 461 46.9
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.5e-96 357.5 431 47.8
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 3.3e-96 356.3 390 50.3
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 9.7e-96 354.8 352 55.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.2e-95 353.6 396 48.2
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.4e-94 350.9 390 49.0
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 4.5e-93 345.9 419 46.3
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 4.5e-93 345.9 374 48.9
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 1.7e-92 344.0 417 46.0
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 3.8e-92 342.8 387 48.6
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 6.5e-92 342.0 387 48.6
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.5e-91 340.9 387 48.3
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 3.2e-91 339.7 387 47.8
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 8.0e-90 335.1 389 48.3
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 8.0e-90 335.1 338 53.3
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.3e-89 333.6 365 48.5
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 7.4e-88 328.6 390 47.9
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 7.4e-88 328.6 351 53.3
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.7e-87 327.4 438 42.9
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 8.2e-87 325.1 376 49.5
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 3.1e-86 323.2 432 44.4
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.2e-85 321.2 337 50.7
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.9e-83 313.9 348 48.0
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 4.2e-83 312.8 412 43.0
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 5.5e-83 312.4 314 56.4
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 7.2e-83 312.0 357 49.0
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.2e-82 311.2 373 45.6
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.1e-82 310.5 425 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 2.7e-82 310.1 372 46.5
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 4.0e-81 306.2 416 42.5
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 7.5e-80 302.0 426 43.2
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.0e-77 293.9 398 41.2
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 2.0e-77 293.9 338 45.9
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 5.9e-77 292.4 376 44.9
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 6.5e-76 288.9 340 48.2
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.9e-75 287.3 405 43.5
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.9e-75 287.3 417 42.7
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.0e-72 277.3 367 43.9
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 3.4e-72 276.6 343 46.4
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.2e-71 273.9 316 48.1
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 4.9e-71 272.7 180 75.0
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 6.4e-55 219.2 406 37.2
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 6.6e-52 209.1 231 48.5
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 6.2e-50 202.6 256 45.7
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 4.3e-43 179.9 211 50.2
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 6.2e-42 176.0 293 41.0
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 8.9e-33 145.6 107 67.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 3.5e-29 133.7 158 45.6
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.2e-23 114.4 152 46.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.9e-23 113.2 144 44.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 4.9e-23 113.2 174 43.7
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 1.4e-22 111.7 136 47.8
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.9e-22 111.3 132 45.5
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 3.1e-17 94.0 105 48.6
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 1.4e-14 85.1 75 54.7
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 7.4e-11 72.8 59 64.4
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 3.1e-09 67.4 68 47.1
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 8.4e-07 59.3 125 29.6
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 5.5e-06 56.6 41 58.5


User provided reference genes

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