Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.1e-74 282.3 147 100.0
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 2.1e-66 255.8 145 89.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 1.0e-65 253.4 141 92.2
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 5.1e-65 251.1 147 84.4
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 5.1e-65 251.1 147 85.7
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 2.5e-64 248.8 147 85.7
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 3.3e-64 248.4 147 85.0
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 4.3e-64 248.1 145 85.5
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 4.3e-64 248.1 143 87.4
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 5.7e-64 247.7 143 86.7
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 9.7e-64 246.9 145 86.2
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 9.7e-64 246.9 143 86.0
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 1.6e-63 246.1 143 87.4
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 1.6e-63 246.1 145 86.2
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 2.2e-63 245.7 143 86.7
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 2.8e-63 245.4 143 86.0
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 3.7e-63 245.0 145 84.8
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 3.7e-63 245.0 143 86.0
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 6.3e-63 244.2 143 86.7
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 8.2e-63 243.8 147 84.4
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.4e-62 243.0 145 85.5
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 2.4e-62 242.3 143 83.9
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 3.1e-62 241.9 147 82.3
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 4.1e-62 241.5 143 85.3
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 4.1e-62 241.5 143 83.9
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 5.3e-62 241.1 142 83.1
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 6.9e-62 240.7 145 83.4
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 1.2e-61 240.0 145 84.8
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.5e-61 239.6 142 84.5
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 2.0e-61 239.2 145 82.1
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 2.0e-61 239.2 141 84.4
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 3.4e-61 238.4 142 88.0
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 3.4e-61 238.4 141 85.8
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 5.9e-61 237.7 141 84.4
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 5.9e-61 237.7 138 85.5
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 7.6e-61 237.3 142 83.1
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 7.6e-61 237.3 145 80.7
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 7.6e-61 237.3 143 83.2
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 1.7e-60 236.1 143 83.2
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 2.2e-60 235.7 143 82.5
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 2.2e-60 235.7 141 85.1
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 2.2e-60 235.7 143 81.8
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 6.5e-60 234.2 143 82.5
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 6.5e-60 234.2 143 82.5
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 1.4e-59 233.0 141 82.3
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 1.9e-59 232.6 151 79.5
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 2.5e-59 232.3 143 81.8
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 2.5e-59 232.3 140 84.3
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 3.2e-59 231.9 143 80.4
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 7.2e-59 230.7 142 81.7
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 7.2e-59 230.7 143 76.9
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 1.6e-58 229.6 142 82.4
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 2.1e-58 229.2 141 80.9
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 2.7e-58 228.8 140 83.6
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 1.8e-57 226.1 154 77.9
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.8e-57 226.1 145 82.1
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 1.8e-57 226.1 131 89.3
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 5.1e-57 224.6 145 78.6
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 8.8e-57 223.8 147 81.6
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 7.4e-56 220.7 153 74.5
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 2.2e-55 219.2 140 75.7
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 6.3e-55 217.6 152 75.0
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 8.2e-55 217.2 140 76.4
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 8.2e-55 217.2 140 76.4
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 8.2e-55 217.2 140 75.0
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 1.4e-54 216.5 155 78.1
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 2.4e-54 215.7 145 76.6
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 2.4e-54 215.7 143 78.3
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 5.3e-54 214.5 143 77.6
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 9.1e-54 213.8 194 64.9
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 9.1e-54 213.8 129 85.3
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 1.5e-53 213.0 143 69.9
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 2.6e-53 212.2 143 75.5
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 8.5e-52 207.2 139 77.0
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 1.4e-51 206.5 111 94.6
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.9e-51 206.1 140 77.1
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 1.6e-50 203.0 130 75.4
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 4.7e-50 201.4 135 74.1
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 4.4e-48 194.9 148 67.6
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 9.7e-48 193.7 143 67.8
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 5.3e-46 188.0 140 70.0
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 9.1e-46 187.2 109 84.4
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 7.2e-43 177.6 123 76.4
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.2e-42 176.8 156 60.9
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.8e-41 172.9 144 61.1
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 1.8e-41 172.9 110 74.5
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 3.0e-41 172.2 143 60.8
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 1.5e-40 169.9 116 76.7
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 5.7e-40 167.9 143 60.1
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 5.7e-40 167.9 143 60.1
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 7.4e-40 167.5 145 58.6
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 9.7e-40 167.2 143 59.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.3e-39 166.8 143 59.4
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.3e-39 166.8 126 67.5
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 2.2e-39 166.0 141 63.8
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 2.8e-39 165.6 145 57.9
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 2.8e-39 165.6 143 59.4
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 2.8e-39 165.6 143 60.1
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 4.8e-39 164.9 145 57.2
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 4.8e-39 164.9 143 58.7
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 6.3e-39 164.5 137 60.6
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 1.1e-38 163.7 141 59.6
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.4e-38 163.3 143 58.7
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.4e-38 163.3 143 58.7
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 2.4e-38 162.5 133 58.6
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 5.9e-37 157.9 151 65.6
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 1.1e-35 153.7 139 52.5
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 2.1e-34 149.4 116 67.2
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 8.0e-34 147.5 104 73.1
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 3.7e-31 138.7 143 55.2
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 6.3e-31 137.9 141 53.2
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 1.6e-26 123.2 81 76.5
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 1.0e-25 120.6 68 85.3
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 1.1e-22 110.5 65 81.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 3.4e-16 89.0 75 60.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 9.8e-16 87.4 91 51.6
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 4.9e-15 85.1 147 40.1
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 5.9e-13 78.2 56 75.0
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 1.2e-08 63.9 36 86.1
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 1.3e-07 60.5 138 32.6
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 1.1e-06 57.4 34 82.4
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 1.1e-06 57.4 34 82.4


User provided reference genes

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