Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.2e-40 167.5 82 100.0
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.7e-25 119.0 83 74.7
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 8.1e-20 100.1 83 68.7
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 1.7e-17 92.4 82 56.1
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.5e-16 88.6 80 55.0
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 3.2e-16 88.2 83 60.2
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.2e-16 87.8 85 52.9
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.2e-15 86.3 82 57.3
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 3.5e-15 84.7 82 54.9
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 6.0e-15 84.0 82 53.7
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.0e-14 83.2 82 54.9
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.0e-14 83.2 70 67.1
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 2.3e-14 82.0 93 50.5
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 3.9e-14 81.3 82 52.4
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 5.1e-14 80.9 82 53.7
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 8.7e-14 80.1 82 51.2
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 1.9e-13 79.0 70 62.9
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 4.3e-13 77.8 87 52.9
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 5.7e-13 77.4 80 53.8
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 7.4e-13 77.0 78 51.3
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 9.6e-13 76.6 84 48.8
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-12 76.3 81 54.3
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 1.6e-12 75.9 69 53.6
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.7e-12 74.7 79 49.4
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.8e-12 74.3 87 50.6
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.2e-12 73.6 87 47.1
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 8.2e-12 73.6 87 47.1
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.1e-11 73.2 77 50.6
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 1.4e-11 72.8 79 51.9
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.8e-11 72.4 83 49.4
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 2.4e-11 72.0 82 48.8
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 3.1e-11 71.6 81 48.1
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 4.0e-11 71.2 82 48.8
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 5.3e-11 70.9 84 50.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 6.9e-11 70.5 82 47.6
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.0e-11 70.1 69 55.1
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 2.0e-10 68.9 40 77.5
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.0e-10 68.9 81 45.7
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.0e-10 68.9 77 49.4
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.6e-10 68.6 84 48.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 3.4e-10 68.2 84 47.6
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 4.5e-10 67.8 87 47.1
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 5.8e-10 67.4 85 47.1
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.0e-09 66.6 62 54.8
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.3e-09 66.2 85 47.1
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.7e-09 65.9 84 47.6
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.7e-09 65.9 78 46.2
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 2.2e-09 65.5 90 45.6
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 2.2e-09 65.5 86 44.2
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.9e-09 65.1 80 47.5
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.9e-09 65.1 85 48.2
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 2.9e-09 65.1 90 50.0
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 3.8e-09 64.7 82 47.6
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 3.8e-09 64.7 78 46.2
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 5.0e-09 64.3 82 45.1
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 5.0e-09 64.3 83 48.2
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 5.0e-09 64.3 87 47.1
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 6.5e-09 63.9 88 46.6
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 6.5e-09 63.9 83 44.6
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.5e-09 63.9 86 47.7
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 8.4e-09 63.5 87 41.4
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 8.4e-09 63.5 78 44.9
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.9e-08 62.4 47 59.6
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.9e-08 62.4 97 42.3
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 1.9e-08 62.4 67 50.7
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.5e-08 62.0 68 51.5
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 2.5e-08 62.0 92 43.5
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 3.2e-08 61.6 66 51.5
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.2e-08 61.6 66 51.5
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 3.2e-08 61.6 59 54.2
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 3.2e-08 61.6 84 46.4
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 3.2e-08 61.6 77 49.4
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 4.2e-08 61.2 43 62.8
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 4.2e-08 61.2 88 39.8
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 4.2e-08 61.2 86 46.5
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 4.2e-08 61.2 87 46.0
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 4.2e-08 61.2 84 44.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 5.5e-08 60.8 90 44.4
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.5e-08 60.8 92 42.4
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 5.5e-08 60.8 92 43.5
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 5.5e-08 60.8 83 41.0
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.1e-08 60.5 68 50.0
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 9.3e-08 60.1 86 43.0
PSO591G0153 Papaver somniferum HOM05D044922 ORTHO05D050178 9.3e-08 60.1 70 47.1
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 9.3e-08 60.1 79 43.0
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 1.2e-07 59.7 80 45.0
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-07 59.7 83 44.6
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 1.2e-07 59.7 82 40.2
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.6e-07 59.3 84 44.0
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.6e-07 59.3 84 44.0
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 2.1e-07 58.9 54 57.4
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.1e-07 58.9 39 71.8
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 2.1e-07 58.9 78 43.6
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.7e-07 58.5 39 69.2
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 2.7e-07 58.5 87 40.2
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 2.7e-07 58.5 79 43.0
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 3.5e-07 58.2 41 65.9
Nitab4.5_0002265g0020 Nicotiana tabacum HOM05D021089 ORTHO05D022961 3.5e-07 58.2 70 44.3
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 4.6e-07 57.8 84 42.9
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 4.6e-07 57.8 83 43.4
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 6.1e-07 57.4 84 41.7
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.1e-07 57.4 33 78.8
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 7.9e-07 57.0 89 40.4
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.9e-07 57.0 84 42.9
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 7.9e-07 57.0 82 43.9
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.0e-06 56.6 31 80.6
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 1.3e-06 56.2 71 49.3
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 1.3e-06 56.2 33 72.7
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.8e-06 55.8 33 75.8
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.8e-06 55.8 33 75.8
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 1.8e-06 55.8 65 50.8
ClCG05G024840 Citrullus lanatus HOM05D031204 ORTHO05D004401 2.3e-06 55.5 70 42.9
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 2.3e-06 55.5 82 45.1
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 2.3e-06 55.5 48 58.3
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 3.0e-06 55.1 79 38.0
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 3.0e-06 55.1 78 42.3
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 3.9e-06 54.7 83 41.0
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 5.1e-06 54.3 33 75.8
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 5.1e-06 54.3 78 42.3
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 8.7e-06 53.5 67 46.3
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 8.7e-06 53.5 37 67.6
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 8.7e-06 53.5 81 44.4


User provided reference genes

Program Settings