Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1253.4 685 100.0
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1243.4 685 99.4
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 0.0e+00 1134.0 685 90.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 0.0e+00 1104.7 746 82.7
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 0.0e+00 1104.0 746 82.6
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1099.3 685 88.5
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 0.0e+00 1080.5 684 86.7
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 0.0e+00 1078.2 653 90.0
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 0.0e+00 1075.1 655 88.7
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.6e-310 1068.9 685 85.7
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 7.9e-310 1066.6 687 84.7
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.0e-309 1064.7 686 84.8
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.9e-309 1064.3 685 85.0
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 5.1e-309 1063.9 685 85.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.3e-307 1059.3 690 84.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 6.3e-307 1057.0 686 84.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 7.6e-305 1050.0 685 84.2
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.0e-304 1049.7 685 83.6
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.0e-304 1049.7 668 84.9
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 5.0e-304 1047.3 688 82.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.9e-303 1045.4 685 82.8
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.9e-303 1045.4 685 84.1
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 3.2e-303 1044.6 686 82.8
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.2e-303 1044.3 681 84.1
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 4.2e-303 1044.3 686 84.0
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 7.2e-303 1043.5 685 83.2
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.2e-302 1042.7 687 82.7
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.6e-302 1041.2 685 83.8
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.0e-301 1039.6 681 83.7
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.3e-301 1039.3 667 84.0
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.3e-301 1039.3 685 83.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.3e-301 1038.5 681 83.8
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 5.1e-301 1037.3 664 84.3
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 6.7e-301 1036.9 689 82.7
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 8.7e-301 1036.6 664 84.5
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.1e-300 1036.2 685 83.4
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 7.4e-300 1033.5 687 82.5
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 2.2e-299 1031.9 681 83.4
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 6.3e-299 1030.4 687 82.1
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 4.1e-298 1027.7 686 82.9
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 5.3e-298 1027.3 665 84.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.6e-297 1025.0 687 82.0
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 4.5e-297 1024.2 692 81.1
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.0e-296 1023.1 680 82.2
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.7e-296 1022.3 690 80.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 2.9e-296 1021.5 681 82.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 8.5e-296 1020.0 683 83.3
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.1e-295 1019.6 686 81.0
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.4e-295 1019.2 681 82.7
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.5e-295 1017.3 681 82.1
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 9.4e-295 1016.5 689 79.8
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.0e-293 1013.1 691 80.0
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 8.8e-293 1010.0 687 80.9
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 2.6e-292 1008.4 687 80.5
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 7.4e-292 1006.9 682 81.2
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 9.7e-292 1006.5 691 79.6
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 4.8e-291 1004.2 689 80.3
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.8e-290 1002.3 687 81.5
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 685 81.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.3e-290 1000.7 683 81.4
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.3e-288 996.1 699 80.0
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 3.8e-288 994.6 660 82.9
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.5e-288 993.8 681 80.8
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.5e-287 991.9 726 76.6
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 3.2e-287 991.5 692 80.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 9.4e-287 989.9 691 78.6
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-286 989.6 730 76.8
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.2e-286 989.6 684 80.1
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 6.1e-286 987.3 689 80.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 8.0e-286 986.9 693 78.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.4e-285 986.1 691 78.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.8e-285 985.7 692 78.2
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-285 985.3 726 76.0
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 3.9e-285 984.6 691 78.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 3.5e-281 971.5 683 78.5
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 4.5e-281 971.1 689 78.5
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 5.9e-281 970.7 690 77.8
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.7e-280 969.1 692 77.3
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 6.5e-280 967.2 692 77.2
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 8.5e-280 966.8 685 78.7
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.5e-279 965.3 685 78.4
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.2e-279 964.5 695 79.3
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 8.0e-278 960.3 655 81.2
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.4e-277 959.5 688 76.9
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.4e-277 959.5 683 78.5
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.7e-277 957.2 733 75.0
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 4.4e-276 954.5 574 91.8
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 7.5e-276 953.7 677 76.7
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-275 952.6 689 76.5
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.8e-275 951.8 691 76.3
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.0e-273 945.7 690 76.2
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.0e-273 945.7 690 76.2
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.2e-272 942.2 637 81.5
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.5e-271 939.5 1035 57.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 7.2e-271 937.2 722 73.1
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 2.1e-270 935.6 685 76.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.7e-270 935.3 683 76.6
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-268 929.9 685 76.2
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 7.5e-268 927.2 685 76.4
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.1e-266 923.3 685 76.1
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.6e-264 913.7 719 73.6
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.5e-263 912.9 692 75.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 5.5e-263 911.0 685 76.2
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.8e-259 898.7 724 72.1
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 4.9e-259 897.9 616 80.8
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.4e-258 896.3 651 76.8
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.3e-255 884.8 740 70.7
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.8e-254 882.1 703 70.4
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.3e-247 858.2 683 69.5
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 3.6e-246 855.1 670 71.2
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 4.0e-245 851.7 682 71.0
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 4.6e-241 838.2 692 68.6
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.9e-223 779.6 703 66.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.4e-221 773.5 675 65.0
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.3e-219 766.9 552 78.6
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.1e-217 759.6 671 64.2
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 2.0e-212 743.0 668 63.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.3e-208 730.3 672 62.1
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 6.5e-171 605.1 424 80.9
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.0e-167 593.6 368 87.0
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 9.1e-165 584.7 711 49.1
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.7e-163 580.5 401 80.5
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 8.6e-139 498.4 346 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.6e-129 466.5 579 50.4
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 2.5e-114 417.2 373 67.8
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 6.9e-96 355.9 501 49.9
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 4.6e-92 343.2 507 49.5
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 8.2e-81 305.8 274 66.4
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 5.3e-80 303.1 704 32.8
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-54 218.4 561 34.9
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 5.5e-53 213.4 775 31.4
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.0e-51 207.6 185 65.4
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 2.2e-49 201.4 129 81.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.5e-47 193.7 157 69.4
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.1e-45 189.1 126 79.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.7e-39 167.9 94 89.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.3e-30 138.3 641 26.5
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 9.5e-29 132.9 93 83.9
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.4e-24 119.0 674 23.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.5e-18 99.0 71 74.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.9e-17 94.7 744 23.0
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 6.0e-15 87.0 109 55.0
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.7e-14 85.5 199 38.7
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 6.6e-14 83.6 82 64.6
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.2e-10 72.8 777 18.5
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 4.4e-10 70.9 82 59.8
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 4.4e-10 70.9 43 76.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 6.4e-09 67.0 58 69.0
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.3e-06 58.5 28 96.4


User provided reference genes

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