Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.3e-221 772.7 381 100.0
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.1e-215 751.1 382 98.4
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 3.5e-166 588.6 384 77.1
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.8e-162 576.2 383 76.2
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.5e-148 530.0 433 64.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.8e-141 506.5 386 66.1
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.7e-139 498.8 379 66.8
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 2.4e-138 496.1 383 66.1
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.6e-137 492.7 370 68.4
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.2e-136 489.6 370 68.4
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 5.5e-135 485.0 386 66.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 4.6e-134 481.9 386 65.5
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 6.0e-134 481.5 379 64.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.8e-133 479.9 379 65.2
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.8e-133 479.9 386 65.3
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.3e-133 479.6 360 66.4
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.3e-133 479.6 379 64.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 6.7e-133 478.0 352 68.8
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.5e-132 476.9 370 65.7
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 2.5e-132 476.1 335 71.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 2.5e-132 476.1 367 66.2
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.5e-132 476.1 381 65.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.3e-131 473.8 369 64.8
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.6e-131 473.4 383 64.0
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.2e-131 471.1 378 64.8
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.4e-130 470.3 378 65.9
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.4e-130 470.3 368 65.2
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.8e-130 469.9 373 63.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-130 469.5 373 64.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 6.9e-130 468.0 368 66.8
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.0e-129 466.5 378 62.7
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 2.0e-129 466.5 373 63.8
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.0e-128 464.2 373 63.5
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.2e-128 463.0 373 64.9
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 3.8e-128 462.2 360 64.4
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.5e-128 461.5 366 65.0
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 8.4e-128 461.1 365 65.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.1e-127 460.7 352 67.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.6e-126 456.8 366 63.4
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.6e-126 456.8 358 64.5
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.6e-126 456.8 356 66.3
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.6e-126 455.3 399 59.9
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 6.0e-126 454.9 369 63.4
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 6.7e-125 451.4 372 64.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 1.1e-124 450.7 371 63.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 3.3e-124 449.1 368 61.4
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.3e-124 448.7 373 62.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.2e-123 446.4 365 63.8
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 3.7e-123 445.7 325 68.3
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 8.2e-123 444.5 340 65.3
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.1e-122 444.1 330 67.0
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.5e-121 440.3 377 62.6
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 2.6e-121 439.5 370 61.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.5e-121 438.7 373 63.3
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 4.2e-119 432.2 336 65.5
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 2.3e-117 426.4 392 58.2
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 3.0e-117 426.0 378 63.5
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.9e-117 425.6 320 65.9
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 7.4e-116 421.4 363 60.6
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.3e-115 420.6 285 72.6
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-115 420.2 329 66.0
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 4.8e-115 418.7 372 59.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 9.1e-114 414.5 373 58.7
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.0e-113 413.3 348 61.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.3e-112 410.6 353 60.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 6.5e-112 408.3 353 60.3
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.1e-111 407.5 386 58.0
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.9e-111 406.8 351 60.4
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.2e-111 406.0 375 58.1
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 7.2e-111 404.8 375 58.1
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 9.4e-111 404.4 383 57.2
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 4.7e-110 402.1 374 58.3
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 7.9e-110 401.4 375 58.1
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 7.9e-110 401.4 377 58.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.4e-109 400.6 381 57.5
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.5e-108 397.1 382 58.4
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 2.6e-108 396.4 372 58.1
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 7.4e-108 394.8 391 56.3
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 9.7e-108 394.4 368 58.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.3e-107 394.0 320 61.6
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 4.8e-107 392.1 366 57.7
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 8.2e-107 391.3 382 56.0
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 3.1e-106 389.4 353 58.4
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 9.1e-106 387.9 359 59.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.6e-105 386.3 374 56.7
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 7.7e-105 384.8 341 59.2
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.0e-104 384.4 321 61.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.3e-104 384.0 317 61.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 5.0e-104 382.1 321 61.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.5e-104 381.3 329 61.4
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-103 380.9 321 61.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-103 380.6 321 60.7
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.2e-103 379.4 341 58.1
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.4e-103 377.9 297 62.6
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.2e-102 377.5 331 58.9
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.1e-102 376.7 331 58.9
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 2.1e-102 376.7 321 60.4
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.1e-102 376.7 356 57.3
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.6e-102 375.9 272 69.1
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 2.3e-101 373.2 324 59.6
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.3e-101 373.2 272 68.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.3e-100 369.4 335 60.6
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 5.7e-100 368.6 320 59.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.7e-99 367.1 313 59.1
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.2e-99 366.7 291 65.3
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.8e-98 363.6 274 66.1
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-95 354.4 272 67.6
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.3e-91 340.9 351 50.4
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.3e-91 340.9 325 56.0
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 6.3e-91 338.6 327 53.8
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.1e-90 337.8 280 63.6
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 2.5e-87 326.6 288 55.6
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 8.0e-86 321.6 291 56.7
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 9.5e-79 298.1 262 60.7
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 4.0e-69 266.2 243 59.7
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.9e-67 259.2 314 43.9
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 7.8e-65 251.9 268 49.6
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 8.6e-64 248.4 295 46.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.2e-62 244.6 295 44.1
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.6e-62 244.2 283 46.3
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 2.9e-59 233.4 278 46.0
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.2e-58 229.9 186 64.5
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 8.1e-54 215.3 288 41.7
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.3e-48 197.2 164 60.4
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.5e-47 193.7 175 59.4
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-31 141.7 139 56.8
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.3e-31 139.8 88 71.6
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 5.3e-29 132.9 126 57.1
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.9e-25 119.0 169 44.4
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.0e-24 118.6 105 59.0
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.4e-21 108.2 121 53.7
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.4e-21 108.2 121 53.7
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 2.0e-20 104.4 77 66.2
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-19 101.3 86 59.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 9.6e-15 85.5 82 57.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-11 74.7 71 53.5
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.2e-10 69.3 97 38.1
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 3.7e-06 57.0 40 67.5
Aqoxy6G01151 Aquilegia oxysepala HOM05D004293 ORTHO05D005044 4.8e-06 56.6 120 34.2


User provided reference genes

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